NM_005536.4(IMPA1):c.817C>T (p.Arg273Ter) AND Intellectual disability, autosomal recessive 59

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Aug 1, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002226865.2

Allele description [Variation Report for NM_005536.4(IMPA1):c.817C>T (p.Arg273Ter)]

NM_005536.4(IMPA1):c.817C>T (p.Arg273Ter)

Gene:

IMPA1:inositol monophosphatase 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

8q21.13

Genomic location:

Preferred name:

NM_005536.4(IMPA1):c.817C>T (p.Arg273Ter)

HGVS:

NC_000008.11:g.81659368G>A
NG_015829.1:g.31987C>T
NM_001144878.2:c.994C>T
NM_001144879.2:c.*111C>T
NM_005536.4:c.817C>TMANE SELECT
NP_001138350.1:p.Arg332Ter
NP_005527.1:p.Arg273Ter
NC_000008.10:g.82571603G>A
NM_005536.3:c.817C>T

Protein change:

R273*

Links:

dbSNP: rs1308325707

NCBI 1000 Genomes Browser:

rs1308325707

Molecular consequence:

NM_001144879.2:c.*111C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001144878.2:c.994C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_005536.4:c.817C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: Intellectual disability, autosomal recessive 59 (MRT59)
Identifiers:: MONDO: MONDO:0015020; MedGen: C4310619; OMIM: 617323

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002505756	Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Aug 1, 2021)	inherited	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002505756

Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Aug 1, 2021)

inherited

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	inherited	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Department of Clinical Genetics, Copenhagen University Hospital, Rigshospitalet, SCV002505756.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	inherited	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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