NM_000186.4(CFH):c.47del (p.Cys16fs) AND Atypical hemolytic-uremic syndrome

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Feb 28, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002294716.2

Allele description [Variation Report for NM_000186.4(CFH):c.47del (p.Cys16fs)]

NM_000186.4(CFH):c.47del (p.Cys16fs)

Gene:

CFH:complement factor H [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

1q31.3

Genomic location:

Preferred name:

NM_000186.4(CFH):c.47del (p.Cys16fs)

HGVS:

NC_000001.11:g.196652164del
NG_007259.1:g.5154del
NM_000186.4:c.47delMANE SELECT
NM_001014975.3:c.47del
NP_000177.2:p.Cys16Leufs
NP_000177.2:p.Cys16fs
NP_001014975.1:p.Cys16fs
LRG_47t1:c.47del
LRG_47:g.5154del
LRG_47p1:p.Cys16Leufs
NC_000001.10:g.196621294del
NM_000186.3:c.47delG

Protein change:

C16fs

Molecular consequence:

NM_000186.4:c.47del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001014975.3:c.47del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Atypical hemolytic-uremic syndrome
Synonyms:: Atypical HUS
Identifiers:: MONDO: MONDO:0016244; MedGen: C2931788

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002587700	Genome Diagnostics Laboratory, The Hospital for Sick Children	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Feb 28, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002587700

Genome Diagnostics Laboratory, The Hospital for Sick Children

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Feb 28, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002587700.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 5, 2022

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