NM_001737.5(C9):c.1677del (p.Lys559fs) AND multiple conditions

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Apr 27, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002481844.1

Allele description [Variation Report for NM_001737.5(C9):c.1677del (p.Lys559fs)]

NM_001737.5(C9):c.1677del (p.Lys559fs)

Gene:

C9:complement C9 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

5p13.1

Genomic location:

Preferred name:

NM_001737.5(C9):c.1677del (p.Lys559fs)

HGVS:

NC_000005.10:g.39285206del
NG_009894.1:g.84352del
NM_001737.5:c.1677delMANE SELECT
NP_001728.1:p.Lys559fs
LRG_32:g.84352del
NC_000005.9:g.39285304del
NC_000005.9:g.39285308del
NM_001737.4:c.1677del

Protein change:

K559fs

Links:

dbSNP: rs762159491

NCBI 1000 Genomes Browser:

rs762159491

Molecular consequence:

NM_001737.5:c.1677del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Complement component 9 deficiency (C9D)
Synonyms:: C9 deficiency
Identifiers:: MONDO: MONDO:0013445; MedGen: C3151189; OMIM: 613825

Name:: Age related macular degeneration 15
Synonyms:: MACULAR DEGENERATION, AGE-RELATED, 15, SUSCEPTIBILITY TO
Identifiers:: MONDO: MONDO:0014266; MedGen: C3810042; OMIM: 615591

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002782609	Fulgent Genetics, Fulgent Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Apr 27, 2022)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002782609

Fulgent Genetics, Fulgent Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Apr 27, 2022)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002782609.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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