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NM_000486.6(AQP2):c.85G>A (p.Gly29Ser) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 10, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002947905.2

Allele description [Variation Report for NM_000486.6(AQP2):c.85G>A (p.Gly29Ser)]

NM_000486.6(AQP2):c.85G>A (p.Gly29Ser)

Gene:
AQP2:aquaporin 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.12
Genomic location:
Preferred name:
NM_000486.6(AQP2):c.85G>A (p.Gly29Ser)
HGVS:
  • NC_000012.12:g.49950915G>A
  • NG_008913.1:g.5175G>A
  • NM_000486.6:c.85G>AMANE SELECT
  • NP_000477.1:p.Gly29Ser
  • NP_000477.1:p.Gly29Ser
  • LRG_717t1:c.85G>A
  • LRG_717:g.5175G>A
  • LRG_717p1:p.Gly29Ser
  • NC_000012.11:g.50344698G>A
  • NM_000486.5:c.85G>A
Protein change:
G29S
Molecular consequence:
  • NM_000486.6:c.85G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003271570Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Sep 10, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Identification of two novel aquaporin-2 mutations in a Thai girl with congenital nephrogenic diabetes insipidus.

Sahakitrungruang T, Wacharasindhu S, Sinthuwiwat T, Supornsilchai V, Suphapeetiporn K, Shotelersuk V.

Endocrine. 2008 Apr;33(2):210-4. doi: 10.1007/s12020-008-9074-x. Epub 2008 May 13.

PubMed [citation]
PMID:
18473191

Hereditary nephrogenic diabetes insipidus in Japanese patients: analysis of 78 families and report of 22 new mutations in AVPR2 and AQP2.

Sasaki S, Chiga M, Kikuchi E, Rai T, Uchida S.

Clin Exp Nephrol. 2013 Jun;17(3):338-44. doi: 10.1007/s10157-012-0726-z. Epub 2012 Nov 14.

PubMed [citation]
PMID:
23150186
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003271570.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This sequence change replaces glycine, which is neutral and non-polar, with serine, which is neutral and polar, at codon 29 of the AQP2 protein (p.Gly29Ser). This variant is present in population databases (no rsID available, gnomAD 0.01%). This missense change has been observed in individuals with autosomal recessive diabetes insipidus (PMID: 18473191, 23150186). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt AQP2 protein function. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024