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NM_003539.4(H4C4):c.122G>A (p.Arg41His) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 20, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003152465.1

Allele description [Variation Report for NM_003539.4(H4C4):c.122G>A (p.Arg41His)]

NM_003539.4(H4C4):c.122G>A (p.Arg41His)

Gene:
H4C4:H4 clustered histone 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p22.2
Genomic location:
Preferred name:
NM_003539.4(H4C4):c.122G>A (p.Arg41His)
Other names:
H4C4, ARG41HIS
HGVS:
  • NC_000006.12:g.26188955C>T
  • NM_003539.4:c.122G>AMANE SELECT
  • NP_003530.1:p.Arg41His
  • NC_000006.11:g.26189183C>T
Protein change:
R41H; ARG41HIS
Links:
OMIM: 602823.0001
Molecular consequence:
  • NM_003539.4:c.122G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003841056OMIM
no assertion criteria provided
Uncertain significance
(Jan 20, 2023)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Recurrent de novo missense variants across multiple histone H4 genes underlie a neurodevelopmental syndrome.

Tessadori F, Duran K, Knapp K, Fellner M; Deciphering Developmental Disorders Study, Smithson S, Beleza Meireles A, Elting MW, Waisfisz Q, O'Donnell-Luria A, Nowak C, Douglas J, Ronan A, Brunet T, Kotzaeridou U, Svihovec S, Saenz MS, Thiffault I, Del Viso F, Devine P, Rego S, Tenney J, et al.

Am J Hum Genet. 2022 Apr 7;109(4):750-758. doi: 10.1016/j.ajhg.2022.02.003. Epub 2022 Feb 23.

PubMed [citation]
PMID:
35202563
PMCID:
PMC9069069

Details of each submission

From OMIM, SCV003841056.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

This variant is classified as a variant of unknown significance because its contribution to Tessadori-Bicknell-van Haaften neurodevelopmental syndrome (see 619758) has not been confirmed.

In a 16-year-old boy (P7) with a neurodevelopmental disorder, Tessadori et al. (2022) identified a de novo heterozygous c.122G-A transition (c.122G-A, NM_003539.4) in the H4C4 gene, resulting in an arg41-to-his (R41H) substitution at a conserved residue in the core globular domain. The variant, which was found by exome sequencing, was not present in the gnomAD database. Expression of the mutation in zebrafish embryos induced severe developmental defects, suggesting that it is pathogenic. The authors postulated a dominant effect. The patient had poor overall growth, global developmental delay, mild motor delay, speech delay, and moderate intellectual disability. Other features included feeding difficulties, brachycephaly, smooth philtrum, and epicanthal folds. Brain imaging showed cochlear abnormalities and arhinencephaly. Hearing and vision were normal. The authors also referred to this mutation as ARG40HIS (R40H), reflecting the practice of dropping the numbering of the first posttranslationally removed methionine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 18, 2023