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NM_001001683.4(MED11):c.325C>T (p.Arg109Ter) AND Neurodegeneration with developmental delay, early respiratory failure, myoclonic seizures, and brain abnormalities

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 19, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003223378.1

Allele description [Variation Report for NM_001001683.4(MED11):c.325C>T (p.Arg109Ter)]

NM_001001683.4(MED11):c.325C>T (p.Arg109Ter)

Gene:
MED11:mediator complex subunit 11 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.2
Genomic location:
Preferred name:
NM_001001683.4(MED11):c.325C>T (p.Arg109Ter)
Other names:
MED11, ARG109TER (rs770295047)
HGVS:
  • NC_000017.11:g.4733158C>T
  • NM_001001683.4:c.325C>TMANE SELECT
  • NM_001305000.2:c.*178C>T
  • NP_001001683.1:p.Arg109Ter
  • NC_000017.10:g.4636453C>T
Protein change:
R109*; ARG109TER
Links:
OMIM: 612383.0001
Molecular consequence:
  • NM_001305000.2:c.*178C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001001683.4:c.325C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Neurodegeneration with developmental delay, early respiratory failure, myoclonic seizures, and brain abnormalities (NDDRSB)
Identifiers:
MONDO: MONDO:0957225; MedGen: C5830433; OMIM: 620327

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003918840OMIM
no assertion criteria provided
Pathogenic
(Apr 19, 2023)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A homozygous MED11 C-terminal variant causes a lethal neurodegenerative disease.

Calì E, Lin SJ, Rocca C, Sahin Y, Al Shamsi A, El Chehadeh S, Chaabouni M, Mankad K, Galanaki E, Efthymiou S, Sudhakar S, Athanasiou-Fragkouli A, Çelik T, Narlı N, Bianca S, Murphy D, De Carvalho Moreira FM; SYNaPS Study Group, Andrea Accogli, Petree C, Huang K, Monastiri K, et al.

Genet Med. 2022 Oct;24(10):2194-2203. doi: 10.1016/j.gim.2022.07.013. Epub 2022 Aug 24.

PubMed [citation]
PMID:
36001086
PMCID:
PMC10519206

Details of each submission

From OMIM, SCV003918840.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 7 individuals from 5 unrelated families of various ethnic descent (Italian, Middle Eastern, North African) with neurodegeneration with developmental delay, early respiratory failure, myoclonic seizures, and brain abnormalities (NDDRSB; 620327), Cali et al. (2022) identified a recurrent homozygous c.325C-T transition (c.325C-T, NM_001001683.4) in exon 3 of the MED11 gene, resulting in an arg109-to-ter (R109X) substitution in the C-terminal region and loss of the last 9 conserved residues of the protein. The patients were ascertained through international collaborative efforts, such as Matchmaker Exchange, after exome or genome sequencing identified the mutation. Three of the families were consanguineous. The mutations, which were confirmed by Sanger sequencing, segregated with the disorder in all families. R109X was present in 14 of over 500,000 exomes/genomes in public databases, but only in the heterozygous state. Haplotype analysis excluded a founder effect. Fibroblasts derived from 1 of the patients showed normal MED11 transcript and protein levels, suggesting the mutant transcript escaped nonsense-mediated mRNA decay as it was located in the last exon. Molecular modeling indicated that the C-terminal region of MED11 harboring the R109X mutation interacts with and forms a structure with MED28 (610311), MED30C (610237), and MED22 (185641); the authors concluded that the R109X mutation may affect the binding of MED11 to other MED subunits.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 2, 2023