U.S. flag

An official website of the United States government

NM_018648.4(NOP10):c.17A>G (p.Tyr6Cys) AND Pulmonary fibrosis and/or bone marrow failure syndrome, telomere-related, 9

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 23, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003232878.2

Allele description [Variation Report for NM_018648.4(NOP10):c.17A>G (p.Tyr6Cys)]

NM_018648.4(NOP10):c.17A>G (p.Tyr6Cys)

Gene:
NOP10:NOP10 ribonucleoprotein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q14
Genomic location:
Preferred name:
NM_018648.4(NOP10):c.17A>G (p.Tyr6Cys)
Other names:
Y6C
HGVS:
  • NC_000015.10:g.34343057T>C
  • NG_007951.1:g.8A>G
  • NG_011562.1:g.5105A>G
  • NG_191170.1:g.279T>C
  • NG_191171.1:g.89T>C
  • NM_018648.4:c.17A>GMANE SELECT
  • NP_061118.1:p.Tyr6Cys
  • NP_061118.1:p.Tyr6Cys
  • LRG_345t1:c.17A>G
  • LRG_270:g.8A>G
  • LRG_345:g.5105A>G
  • LRG_345p1:p.Tyr6Cys
  • NC_000015.9:g.34635258T>C
  • NM_018648.3:c.17A>G
Protein change:
TYR6CYS
Links:
OMIM: 606471.0002
Molecular consequence:
  • NM_018648.4:c.17A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Pulmonary fibrosis and/or bone marrow failure syndrome, telomere-related, 9 (PFBMFT9)
Identifiers:
MONDO: MONDO:0957294; MedGen: C5830560; OMIM: 620400

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003929409OMIM
no assertion criteria provided
Pathogenic
(Jun 23, 2023)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

First heterozygous NOP10 mutation in familial pulmonary fibrosis.

Kannengiesser C, Manali ED, Revy P, Callebaut I, Ba I, Borgel A, Oudin C, Haritou A, Kolilekas L, Malagari K, Borie R, Lainey E, Boileau C, Crestani B, Papiris SA.

Eur Respir J. 2020 Jun 11;55(6). doi:pii: 1902465. 10.1183/13993003.02465-2019. Print 2020 Jun. No abstract available.

PubMed [citation]
PMID:
32139460

Details of each submission

From OMIM, SCV003929409.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 4 affected individuals from a large family with telomere-related pulmonary fibrosis and/or bone marrow failure syndrome-9 (PFBMFT9; 620400), Kannengiesser et al. (2020) identified a heterozygous c.17A-G transition (c.17A-G, NM_018648) in the NOP10 gene, resulting in a tyr6-to-cys (Y6C) substitution at a conserved residue in the small N-terminal globular ribbon domain. The mutation, which was found by whole-exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. It was not present in 140,000 individuals in the gnomAD database. One unaffected family member also carried the mutation, suggesting incomplete penetrance. Functional studies of the mutation and studies of patient cells were not performed, but molecular modeling demonstrated that the affected residue is in a region in close contact with DKC1 (300126) and likely disrupts stability of the domain and the NOP10 complex. Patients with the mutation showed short telomeres, although 1 noncarrier also had short telomeres, suggesting that epigenetic factors may play a role in telomere length.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 2, 2023