NM_002128.7(HMGB1):c.591GGA[3] (p.Glu201del) AND not provided

Germline classification:: Benign (1 submission)
Last evaluated:: May 1, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003398341.10

Allele description [Variation Report for NM_002128.7(HMGB1):c.591GGA[3] (p.Glu201del)]

NM_002128.7(HMGB1):c.591GGA[3] (p.Glu201del)

Gene:

HMGB1:high mobility group box 1 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

13q12.3

Genomic location:

Preferred name:

NM_002128.7(HMGB1):c.591GGA[3] (p.Glu201del)

HGVS:

NC_000013.11:g.30461405CTC[3]
NM_001313892.2:c.591GGA[3]
NM_001313893.1:c.591GGA[3]
NM_001363661.2:c.*164GGA[3]
NM_001370339.1:c.*269GGA[3]
NM_001370340.1:c.591GGA[3]
NM_001370341.1:c.591GGA[3]
NM_002128.7:c.591GGA[3]MANE SELECT
NP_001300821.1:p.Glu201del
NP_001300822.1:p.Glu201del
NP_001357269.1:p.Glu201del
NP_001357270.1:p.Glu201del
NP_002119.1:p.Glu201del
NC_000013.10:g.31035542CTC[3]

Protein change:

E201del

Molecular consequence:

NM_001363661.2:c.*164GGA[3] - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001370339.1:c.*269GGA[3] - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001313892.2:c.591GGA[3] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001313893.1:c.591GGA[3] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001370340.1:c.591GGA[3] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_001370341.1:c.591GGA[3] - inframe_deletion - [Sequence Ontology: SO:0001822]
NM_002128.7:c.591GGA[3] - inframe_deletion - [Sequence Ontology: SO:0001822]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004132946	CeGaT Center for Human Genetics Tuebingen	criteria provided, single submitter (CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)	Benign (May 1, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004132946

CeGaT Center for Human Genetics Tuebingen

criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)

Benign
(May 1, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	2	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From CeGaT Center for Human Genetics Tuebingen, SCV004132946.10

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	2	not provided	not provided	clinical testing	not provided

Description

HMGB1: BS1, BS2

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		2	not provided	not provided	not provided

Last Updated: Oct 20, 2024

ClinVar

Relating variation to medicine