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GRCh37/hg19 7q22.1(chr7:99263437-100105272)x1 AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 20, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003482973.1

Allele description [Variation Report for GRCh37/hg19 7q22.1(chr7:99263437-100105272)x1]

GRCh37/hg19 7q22.1(chr7:99263437-100105272)x1

Genes:
  • COPS6:COP9 signalosome subunit 6 [Gene - OMIM - HGNC]
  • PVRIG:PVR related immunoglobulin domain containing [Gene - OMIM - HGNC]
  • STAG3:STAG3 cohesin complex component [Gene - OMIM - HGNC]
  • TAF6:TATA-box binding protein associated factor 6 [Gene - OMIM - HGNC]
  • TSC22D4:TSC22 domain family member 4 [Gene - OMIM - HGNC]
  • AP4M1:adaptor related protein complex 4 subunit mu 1 [Gene - OMIM - HGNC]
  • AZGP1:alpha-2-glycoprotein 1, zinc-binding [Gene - OMIM - HGNC]
  • CNPY4:canopy FGF signaling regulator 4 [Gene - OMIM - HGNC]
  • CYP3A43:cytochrome P450 family 3 subfamily A member 43 [Gene - OMIM - HGNC]
  • CYP3A4:cytochrome P450 family 3 subfamily A member 4 [Gene - OMIM - HGNC]
  • CYP3A5:cytochrome P450 family 3 subfamily A member 5 [Gene - OMIM - HGNC]
  • CYP3A7:cytochrome P450 family 3 subfamily A member 7 [Gene - OMIM - HGNC]
  • GAL3ST4:galactose-3-O-sulfotransferase 4 [Gene - OMIM - HGNC]
  • GJC3:gap junction protein gamma 3 [Gene - OMIM - HGNC]
  • GPC2:glypican 2 [Gene - OMIM - HGNC]
  • LAMTOR4:late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 [Gene - OMIM - HGNC]
  • MBLAC1:metallo-beta-lactamase domain containing 1 [Gene - HGNC]
  • MEPCE:methylphosphate capping enzyme [Gene - OMIM - HGNC]
  • MIR106B:microRNA 106b [Gene - OMIM - HGNC]
  • MIR25:microRNA 25 [Gene - OMIM - HGNC]
  • MIR93:microRNA 93 [Gene - OMIM - HGNC]
  • MCM7:minichromosome maintenance complex component 7 [Gene - OMIM - HGNC]
  • NYAP1:neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1 [Gene - OMIM - HGNC]
  • OR2AE1:olfactory receptor family 2 subfamily AE member 1 [Gene - HGNC]
  • PILRA:paired immunoglobin like type 2 receptor alpha [Gene - OMIM - HGNC]
  • PPP1R35:protein phosphatase 1 regulatory subunit 35 [Gene - OMIM - HGNC]
  • SPDYE3:speedy/RINGO cell cycle regulator family member E3 [Gene - OMIM - HGNC]
  • SPACDR:sperm acrosome developmental regulator [Gene - OMIM - HGNC]
  • TRAPPC14:trafficking protein particle complex subunit 14 [Gene - OMIM - HGNC]
  • TRIM4:tripartite motif containing 4 [Gene - HGNC]
  • ZCWPW1:zinc finger CW-type and PWWP domain containing 1 [Gene - OMIM - HGNC]
  • ZSCAN21:zinc finger and SCAN domain containing 21 [Gene - OMIM - HGNC]
  • ZNF3:zinc finger protein 3 [Gene - OMIM - HGNC]
  • ZKSCAN1:zinc finger with KRAB and SCAN domains 1 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
7q22.1
Genomic location:
Chr7: 99263437 - 100105272 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 7q22.1(chr7:99263437-100105272)x1
HGVS:

    Condition(s)

    Synonyms:
    none provided
    Identifiers:
    MedGen: C3661900

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    Assertion and evidence details

    Help
    Submission AccessionSubmitterReview Status
    (Assertion method)    		Clinical Significance
    (Last evaluated)    		OriginMethodCitations
    SCV004231490Quest Diagnostics Nichols Institute San Juan Capistrano
    criteria provided, single submitter

    (ACMG/ClinGen CNV Guidelines, 2019)    		Uncertain significance
    (Jun 20, 2023)     		unknownclinical testing

    PubMed (1)
    [See all records that cite this PMID]

    Help

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

    Citations

    PubMed

    Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen).

    Riggs ER, Andersen EF, Cherry AM, Kantarci S, Kearney H, Patel A, Raca G, Ritter DI, South ST, Thorland EC, Pineda-Alvarez D, Aradhya S, Martin CL.

    Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6. Erratum in: Genet Med. 2021 Nov;23(11):2230. doi: 10.1038/s41436-021-01150-9.

    PubMed [citation]
    PMID:
    31690835
    PMCID:
    PMC7313390

    Details of each submission

    From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV004231490.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not providednot providednot providednot providedclinical testing PubMed (1)
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

    Last Updated: Feb 4, 2024