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NM_000369.5(TSHR):c.1555C>T (p.Arg519Cys) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 8, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003557831.2

Allele description [Variation Report for NM_000369.5(TSHR):c.1555C>T (p.Arg519Cys)]

NM_000369.5(TSHR):c.1555C>T (p.Arg519Cys)

Genes:
TSHR-AS1:TSHR antisense RNA 1 [Gene - HGNC]
TSHR:thyroid stimulating hormone receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q31.1
Genomic location:
Preferred name:
NM_000369.5(TSHR):c.1555C>T (p.Arg519Cys)
HGVS:
  • NC_000014.9:g.81143613C>T
  • NG_009206.1:g.193089C>T
  • NM_000369.5:c.1555C>TMANE SELECT
  • NP_000360.2:p.Arg519Cys
  • NP_000360.2:p.Arg519Cys
  • LRG_523t1:c.1555C>T
  • LRG_523:g.193089C>T
  • LRG_523p1:p.Arg519Cys
  • NC_000014.8:g.81609957C>T
  • NM_000369.2:c.1555C>T
Protein change:
R519C
Molecular consequence:
  • NM_000369.5:c.1555C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004297142Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Pathogenic
(Sep 8, 2023)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Molecular screening of the TSH receptor (TSHR) and thyroid peroxidase (TPO) genes in Korean patients with nonsyndromic congenital hypothyroidism.

Lee ST, Lee DH, Kim JY, Kwon MJ, Kim JW, Hong YH, Lee YW, Ki CS.

Clin Endocrinol (Oxf). 2011 Nov;75(5):715-21. doi: 10.1111/j.1365-2265.2011.04156.x.

PubMed [citation]
PMID:
21707688

Frequency and clinical implication of the R450H mutation in the thyrotropin receptor gene in the Japanese population detected by Smart Amplification Process 2.

Tsunekawa K, Yanagawa Y, Aoki T, Morimura T, Araki O, Kimura T, Ogiwara T, Kotajima N, Yanagawa M, Murakami M.

Biomed Res Int. 2014;2014:964635. doi: 10.1155/2014/964635. Epub 2014 May 5.

PubMed [citation]
PMID:
24895636
PMCID:
PMC4026960
See all PubMed Citations (5)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV004297142.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

This missense change has been observed in individual(s) with clinical features of familial hypothyroidism (PMID: 16756469, 21707688, 24895636, 26709262). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. It has also been observed to segregate with disease in related individuals. For these reasons, this variant has been classified as Pathogenic. This variant disrupts the p.Arg519 amino acid residue in TSHR. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 16756469). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Experimental studies have shown that this missense change affects TSHR function (PMID: 16756469). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt TSHR protein function. This variant is present in population databases (rs756016910, gnomAD 0.02%). This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 519 of the TSHR protein (p.Arg519Cys).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 25, 2025