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NM_001365536.1(SCN9A):c.5750T>C (p.Ile1917Thr) AND Primary erythromelalgia

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 9, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003886376.1

Allele description [Variation Report for NM_001365536.1(SCN9A):c.5750T>C (p.Ile1917Thr)]

NM_001365536.1(SCN9A):c.5750T>C (p.Ile1917Thr)

Genes:
SCN1A-AS1:SCN1A and SCN9A antisense RNA 1 [Gene - HGNC]
SCN9A:sodium voltage-gated channel alpha subunit 9 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q24.3
Genomic location:
Preferred name:
NM_001365536.1(SCN9A):c.5750T>C (p.Ile1917Thr)
HGVS:
  • NC_000002.12:g.166198889A>G
  • NG_012798.1:g.182099T>C
  • NM_001365536.1:c.5750T>CMANE SELECT
  • NM_002977.4:c.5717T>C
  • NP_001352465.1:p.Ile1917Thr
  • NP_002968.1:p.Ile1906Thr
  • NP_002968.1:p.Ile1906Thr
  • NP_002968.2:p.Ile1906Thr
  • LRG_369t1:c.5717T>C
  • LRG_369:g.182099T>C
  • LRG_369p1:p.Ile1906Thr
  • NC_000002.11:g.167055399A>G
  • NM_002977.2:c.5717T>C
  • NM_002977.3:c.5717T>C
Protein change:
I1917T
Links:
dbSNP: rs200876442
NCBI 1000 Genomes Browser:
rs200876442
Molecular consequence:
  • NM_001365536.1:c.5750T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002977.4:c.5717T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Primary erythromelalgia
Synonyms:
ERYTHERMALGIA, PRIMARY; SCN9A-Related Inherited Erythromelalgia
Identifiers:
MONDO: MONDO:0007571; MedGen: C0014805; Orphanet: 306577; Orphanet: 90026; OMIM: 133020

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004704498Human Genetics Bochum, Ruhr University Bochum
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Mar 9, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Human Genetics Bochum, Ruhr University Bochum, SCV004704498.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

ACMG criteria used to clasify this variant: PP3_MOD

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 26, 2025