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NC_000012.11:g.(?_120270555)_(124242579_?)dup AND Deficiency of butyryl-CoA dehydrogenase

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 13, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004578383.2

Allele description [Variation Report for NC_000012.11:g.(?_120270555)_(124242579_?)dup]

NC_000012.11:g.(?_120270555)_(124242579_?)dup

Genes:
  • OASL:2'-5'-oligoadenylate synthetase like [Gene - OMIM - HGNC]
  • OGFOD2:2-oxoglutarate and iron dependent oxygenase domain containing 2 [Gene - HGNC]
  • HPD:4-hydroxyphenylpyruvate dioxygenase [Gene - OMIM - HGNC]
  • ARL6IP4:ARF like GTPase 6 interacting protein 4 [Gene - OMIM - HGNC]
  • ABCB9:ATP binding cassette subfamily B member 9 [Gene - OMIM - HGNC]
  • ATP6V0A2:ATPase H+ transporting V0 subunit a2 [Gene - OMIM - HGNC]
  • BCL7A:BAF chromatin remodeling complex subunit BCL7A [Gene - OMIM - HGNC]
  • BICDL1:BICD family like cargo adaptor 1 [Gene - OMIM - HGNC]
  • CLIP1:CAP-Gly domain containing linker protein 1 [Gene - OMIM - HGNC]
  • DDX55:DEAD-box helicase 55 [Gene - OMIM - HGNC]
  • GCN1:GCN1 activator of EIF2AK4 [Gene - OMIM - HGNC]
  • HNF1A:HNF1 homeobox A [Gene - OMIM - HGNC]
  • MPHOSPH9:M-phase phosphoprotein 9 [Gene - OMIM - HGNC]
  • MLXIP:MLX interacting protein [Gene - OMIM - HGNC]
  • MORN3:MORN repeat containing 3 [Gene - HGNC]
  • ORAI1:ORAI calcium release-activated calcium modulator 1 [Gene - OMIM - HGNC]
  • POP5:POP5 homolog, ribonuclease P/MRP subunit [Gene - OMIM - HGNC]
  • RAB35:RAB35, member RAS oncogene family [Gene - OMIM - HGNC]
  • RILPL1:Rab interacting lysosomal protein like 1 [Gene - OMIM - HGNC]
  • RILPL2:Rab interacting lysosomal protein like 2 [Gene - OMIM - HGNC]
  • SETD1B:SET domain containing 1B, histone lysine methyltransferase [Gene - OMIM - HGNC]
  • TRIAP1:TP53 regulated inhibitor of apoptosis 1 [Gene - OMIM - HGNC]
  • B3GNT4:UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [Gene - OMIM - HGNC]
  • VPS33A:VPS33A core subunit of CORVET and HOPS complexes [Gene - OMIM - HGNC]
  • VPS37B:VPS37B subunit of ESCRT-I [Gene - OMIM - HGNC]
  • ACADS:acyl-CoA dehydrogenase short chain [Gene - OMIM - HGNC]
  • ANAPC5:anaphase promoting complex subunit 5 [Gene - OMIM - HGNC]
  • RSRC2:arginine and serine rich coiled-coil 2 [Gene - OMIM - HGNC]
  • CABP1:calcium binding protein 1 [Gene - OMIM - HGNC]
  • CAMKK2:calcium/calmodulin dependent protein kinase kinase 2 [Gene - OMIM - HGNC]
  • C12orf43:chromosome 12 open reading frame 43 [Gene - HGNC]
  • CFAP251:cilia and flagella associated protein 251 [Gene - OMIM - HGNC]
  • CIT:citron rho-interacting serine/threonine kinase [Gene - OMIM - HGNC]
  • COQ5:coenzyme Q5, methyltransferase [Gene - OMIM - HGNC]
  • CCDC62:coiled-coil domain containing 62 [Gene - OMIM - HGNC]
  • CDK2AP1:cyclin dependent kinase 2 associated protein 1 [Gene - OMIM - HGNC]
  • COX6A1:cytochrome c oxidase subunit 6A1 [Gene - OMIM - HGNC]
  • DENR:density regulated re-initiation and release factor [Gene - OMIM - HGNC]
  • DIABLO:diablo IAP-binding mitochondrial protein [Gene - OMIM - HGNC]
  • DYNLL1:dynein light chain LC8-type 1 [Gene - OMIM - HGNC]
  • EIF2B1:eukaryotic translation initiation factor 2B subunit alpha [Gene - OMIM - HGNC]
  • GTF2H3:general transcription factor IIH subunit 3 [Gene - OMIM - HGNC]
  • GATC:glutamyl-tRNA amidotransferase subunit C [Gene - OMIM - HGNC]
  • HIP1R:huntingtin interacting protein 1 related [Gene - OMIM - HGNC]
  • HCAR1:hydroxycarboxylic acid receptor 1 [Gene - OMIM - HGNC]
  • HCAR2:hydroxycarboxylic acid receptor 2 [Gene - OMIM - HGNC]
  • HCAR3:hydroxycarboxylic acid receptor 3 [Gene - OMIM - HGNC]
  • IL31:interleukin 31 [Gene - OMIM - HGNC]
  • KNTC1:kinetochore associated 1 [Gene - OMIM - HGNC]
  • LRRC43:leucine rich repeat containing 43 [Gene - HGNC]
  • KDM2B:lysine demethylase 2B [Gene - OMIM - HGNC]
  • KMT5A:lysine methyltransferase 5A [Gene - OMIM - HGNC]
  • MLEC:malectin [Gene - OMIM - HGNC]
  • MTRFR:mitochondrial translation release factor in rescue [Gene - OMIM - HGNC]
  • MSI1:musashi RNA binding protein 1 [Gene - OMIM - HGNC]
  • PXN:paxillin [Gene - OMIM - HGNC]
  • PITPNM2:phosphatidylinositol transfer protein membrane associated 2 [Gene - OMIM - HGNC]
  • PLA2G1B:phospholipase A2 group IB [Gene - OMIM - HGNC]
  • PSMD9:proteasome 26S subunit, non-ATPase 9 [Gene - OMIM - HGNC]
  • P2RX4:purinergic receptor P2X 4 [Gene - OMIM - HGNC]
  • P2RX7:purinergic receptor P2X 7 [Gene - OMIM - HGNC]
  • RHOF:ras homolog family member F, filopodia associated [Gene - OMIM - HGNC]
  • RPLP0:ribosomal protein lateral stalk subunit P0 [Gene - OMIM - HGNC]
  • RNF10:ring finger protein 10 [Gene - OMIM - HGNC]
  • RNF34:ring finger protein 34 [Gene - OMIM - HGNC]
  • SRSF9:serine and arginine rich splicing factor 9 [Gene - OMIM - HGNC]
  • SPPL3:signal peptide peptidase like 3 [Gene - OMIM - HGNC]
  • SIRT4:sirtuin 4 [Gene - OMIM - HGNC]
  • SNRNP35:small nuclear ribonucleoprotein U11/U12 subunit 35 [Gene - OMIM - HGNC]
  • SBNO1:strawberry notch homolog 1 [Gene - OMIM - HGNC]
  • TCTN2:tectonic family member 2 [Gene - OMIM - HGNC]
  • TMED2:transmembrane p24 trafficking protein 2 [Gene - OMIM - HGNC]
  • TMEM120B:transmembrane protein 120B [Gene - OMIM - HGNC]
  • UNC119B:unc-119 lipid binding chaperone B [Gene - OMIM - HGNC]
  • ZCCHC8:zinc finger CCHC-type containing 8 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
12q24.23-24.31
Genomic location:
Chr12: 120270555 - 124242579 (on Assembly GRCh37)
Preferred name:
NC_000012.11:g.(?_120270555)_(124242579_?)dup
HGVS:
NC_000012.11:g.(?_120270555)_(124242579_?)dup

Condition(s)

Name:
Deficiency of butyryl-CoA dehydrogenase (ACADSD)
Synonyms:
ACYL-CoA DEHYDROGENASE, SHORT-CHAIN, DEFICIENCY OF; Lipid-storage myopathy secondary to short chain acyl CoA dehydrogenase deficiency; SCAD DEFICIENCY, MILD
Identifiers:
MONDO: MONDO:0008722; MedGen: C0342783; Orphanet: 26792; OMIM: 201470

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV005067091Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Jan 13, 2023)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group, Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV005067091.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals affected with ACADS-related conditions. A copy number gain of the genomic region encompassing the full coding sequence of the ACADS gene has been identified. The boundaries of this event are unknown as they extend beyond the assayed region for this gene and therefore may encompass additional genes. As the precise location of this event is unknown, it may be in tandem or it may be located elsewhere in the genome.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024