NM_001381853.1(CHML):c.1367G>C (p.Arg456Thr) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 20, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004610379.1

Allele description [Variation Report for NM_001381853.1(CHML):c.1367G>C (p.Arg456Thr)]

NM_001381853.1(CHML):c.1367G>C (p.Arg456Thr)

Genes:

CHML:CHM like Rab escort protein [Gene - OMIM - HGNC]
OPN3:opsin 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q43

Genomic location:

Preferred name:

NM_001381853.1(CHML):c.1367G>C (p.Arg456Thr)

HGVS:

NC_000001.11:g.241634400C>G
NM_001381853.1:c.1367G>CMANE SELECT
NM_001381854.1:c.1367G>C
NM_001381855.1:c.*1327G>C
NM_001381856.1:c.*1633G>C
NM_001821.4:c.1367G>C
NM_014322.3:c.373+5482G>CMANE SELECT
NP_001368782.1:p.Arg456Thr
NP_001368783.1:p.Arg456Thr
NP_001812.2:p.Arg456Thr
NC_000001.10:g.241797702C>G
NM_001821.3:c.1367G>C

Protein change:

R456T

Molecular consequence:

NM_001381855.1:c.*1327G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001381856.1:c.*1633G>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_014322.3:c.373+5482G>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001381853.1:c.1367G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001381854.1:c.1367G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001821.4:c.1367G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005104142	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 20, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005104142

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 20, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005104142.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1367G>C (p.R456T) alteration is located in exon 1 (coding exon 1) of the CHML gene. This alteration results from a G to C substitution at nucleotide position 1367, causing the arginine (R) at amino acid position 456 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

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