NM_033343.4(LHX4):c.1112A>C (p.Tyr371Ser) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 28, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004642466.1

Allele description [Variation Report for NM_033343.4(LHX4):c.1112A>C (p.Tyr371Ser)]

NM_033343.4(LHX4):c.1112A>C (p.Tyr371Ser)

Genes:

LHX4-AS1:LHX4 antisense RNA 1 [Gene - HGNC]
LHX4:LIM homeobox 4 [Gene - OMIM - HGNC]
ACBD6:acyl-CoA binding domain containing 6 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q25.2

Genomic location:

Preferred name:

NM_033343.4(LHX4):c.1112A>C (p.Tyr371Ser)

HGVS:

NC_000001.11:g.180274518A>C
NG_008081.1:g.49212A>C
NM_033343.4:c.1112A>CMANE SELECT
NP_203129.1:p.Tyr371Ser
NP_203129.1:p.Tyr371Ser
NC_000001.10:g.180243653A>C
NM_033343.3:c.1112A>C

Protein change:

Y371S

Molecular consequence:

NM_033343.4:c.1112A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005133296	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 28, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005133296

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 28, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005133296.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1112A>C (p.Y371S) alteration is located in exon 6 (coding exon 6) of the LHX4 gene. This alteration results from a A to C substitution at nucleotide position 1112, causing the tyrosine (Y) at amino acid position 371 to be replaced by a serine (S). This variant was not reported in population-based cohorts in the Genome Aggregation Database (gnomAD). This amino acid position is highly conserved in available vertebrate species. This alteration is predicted to be deleterious by in silico analysis. Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 11, 2024

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