NM_018919.3(PCDHGA6):c.859A>G (p.Lys287Glu) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 11, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004653268.1

Allele description [Variation Report for NM_018919.3(PCDHGA6):c.859A>G (p.Lys287Glu)]

NM_018919.3(PCDHGA6):c.859A>G (p.Lys287Glu)

Genes:

PCDHG@:protocadherin gamma cluster [Gene - OMIM - HGNC]
PCDHGA1:protocadherin gamma subfamily A, 1 [Gene - OMIM - HGNC]
PCDHGA2:protocadherin gamma subfamily A, 2 [Gene - OMIM - HGNC]
PCDHGA3:protocadherin gamma subfamily A, 3 [Gene - OMIM - HGNC]
PCDHGA4:protocadherin gamma subfamily A, 4 [Gene - OMIM - HGNC]
PCDHGA5:protocadherin gamma subfamily A, 5 [Gene - OMIM - HGNC]
PCDHGA6:protocadherin gamma subfamily A, 6 [Gene - OMIM - HGNC]
PCDHGB1:protocadherin gamma subfamily B, 1 [Gene - OMIM - HGNC]
PCDHGB2:protocadherin gamma subfamily B, 2 [Gene - OMIM - HGNC]
PCDHGB3:protocadherin gamma subfamily B, 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

5q31.3

Genomic location:

Preferred name:

NM_018919.3(PCDHGA6):c.859A>G (p.Lys287Glu)

HGVS:

NC_000005.10:g.141374942A>G
NG_000012.2:g.85139A>G
NM_018912.3:c.2421+41837A>GMANE SELECT
NM_018915.4:c.2424+33547A>GMANE SELECT
NM_018916.4:c.2424+28485A>GMANE SELECT
NM_018917.4:c.2514+17321A>GMANE SELECT
NM_018918.3:c.2421+8191A>GMANE SELECT
NM_018919.3:c.859A>GMANE SELECT
NM_018922.3:c.2409+22273A>GMANE SELECT
NM_018923.3:c.2421+12386A>GMANE SELECT
NM_018924.5:c.2415+2133A>GMANE SELECT
NM_032086.2:c.859A>G
NP_061742.1:p.Lys287Glu
NP_114475.1:p.Lys287Glu
NC_000005.9:g.140754509A>G
NM_018919.2:c.859A>G

Protein change:

K287E

Molecular consequence:

NM_018912.3:c.2421+41837A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018915.4:c.2424+33547A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018916.4:c.2424+28485A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018917.4:c.2514+17321A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018918.3:c.2421+8191A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018922.3:c.2409+22273A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018923.3:c.2421+12386A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018924.5:c.2415+2133A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_018919.3:c.859A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_032086.2:c.859A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005152571	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jun 11, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005152571

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jun 11, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005152571.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.859A>G (p.K287E) alteration is located in exon 1 (coding exon 1) of the PCDHGA6 gene. This alteration results from a A to G substitution at nucleotide position 859, causing the lysine (K) at amino acid position 287 to be replaced by a glutamic acid (E). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

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