NM_001018111.3(PODXL):c.66GTCGCC[5] (p.24PS[5]) AND PODXL-related disorder

Germline classification:: Benign (1 submission)
Last evaluated:: Mar 22, 2024
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004756281.1

Allele description [Variation Report for NM_001018111.3(PODXL):c.66GTCGCC[5] (p.24PS[5])]

NM_001018111.3(PODXL):c.66GTCGCC[5] (p.24PS[5])

Genes:

LOC129999375:ATAC-STARR-seq lymphoblastoid silent region 18663 [Gene]
PODXL:podocalyxin like [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

7q32.3

Genomic location:

Preferred name:

NM_001018111.3(PODXL):c.66GTCGCC[5] (p.24PS[5])

HGVS:

NC_000007.14:g.131556272GCGACG[5]
NG_042104.1:g.5324GTCGCC[5]
NM_001018111.3:c.66GTCGCC[5]MANE SELECT
NM_005397.3:c.84_89dup6
NM_005397.4:c.66GTCGCC[5]
NP_001018121.1:p.24PS[5]
NP_005388.2:p.24PS[5]
NC_000007.13:g.131241029_131241030insGGCGAC
NC_000007.13:g.131241031GCGACG[5]
NM_001018111.3:c.84_89dupGTCGCCMANE SELECT

Links:

dbSNP: rs11277659

NCBI 1000 Genomes Browser:

rs11277659

Molecular consequence:

NM_001018111.3:c.66GTCGCC[5] - inframe_insertion - [Sequence Ontology: SO:0001821]
NM_005397.4:c.66GTCGCC[5] - inframe_insertion - [Sequence Ontology: SO:0001821]

Condition(s)

Name:: PODXL-related disorder
Synonyms:: PODXL-related condition
Identifiers:

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005347497	PreventionGenetics, part of Exact Sciences	no assertion criteria provided	Benign (Mar 22, 2024)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005347497

PreventionGenetics, part of Exact Sciences

no assertion criteria provided

Benign
(Mar 22, 2024)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV005347497.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is classified as benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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Relating variation to medicine