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NM_147686.4(TRAF3IP2):c.488_492del (p.Ser162_Leu163insTer) AND Psoriasis 13, susceptibility to

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Sep 22, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004764608.1

Allele description [Variation Report for NM_147686.4(TRAF3IP2):c.488_492del (p.Ser162_Leu163insTer)]

NM_147686.4(TRAF3IP2):c.488_492del (p.Ser162_Leu163insTer)

Genes:
TRAF3IP2:TRAF3 interacting protein 2 [Gene - OMIM - HGNC]
TRAF3IP2-AS1:TRAF3IP2 antisense RNA 1 [Gene - HGNC]
LOC114803478:TRAF3IP2 eExon liver enhancer [Gene]
Variant type:
Deletion
Cytogenetic location:
6q21
Genomic location:
Preferred name:
NM_147686.4(TRAF3IP2):c.488_492del (p.Ser162_Leu163insTer)
HGVS:
  • NC_000006.12:g.111591596_111591600del
  • NG_032030.2:g.19280_19284del
  • NG_064654.1:g.500_504del
  • NM_001164281.3:c.488_492del
  • NM_147200.3:c.515_519del
  • NM_147686.4:c.488_492delMANE SELECT
  • NP_001157753.1:p.Ser162_Leu163insTer
  • NP_671733.2:p.Ser171_Leu172insTer
  • NP_679211.2:p.Ser162_Leu163insTer
  • LRG_1337t1:c.488_492del
  • LRG_1337:g.19280_19284del
  • LRG_1337p1:p.Ser162_Leu163insTer
  • NC_000006.11:g.111912799_111912803del
Molecular consequence:
  • NM_001164281.3:c.488_492del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_147200.3:c.515_519del - nonsense - [Sequence Ontology: SO:0001587]
  • NM_147686.4:c.488_492del - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Psoriasis 13, susceptibility to
Synonyms:
Psoriasis susceptibility 13
Identifiers:
MONDO: MONDO:0013554; MedGen: C3279754; OMIM: 614070

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005374157Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Sep 22, 2024) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV005374157.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024