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NM_006888.6(CALM1):c.398G>T (p.Gly133Val) AND Long QT syndrome

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Mar 1, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004775600.2

Allele description [Variation Report for NM_006888.6(CALM1):c.398G>T (p.Gly133Val)]

NM_006888.6(CALM1):c.398G>T (p.Gly133Val)

Genes:
LOC126862021:CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:90870785-90871984 [Gene]
CALM1:calmodulin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q32.11
Genomic location:
Preferred name:
NM_006888.6(CALM1):c.398G>T (p.Gly133Val)
HGVS:
  • NC_000014.9:g.90404491G>T
  • NG_013338.1:g.12509G>T
  • NG_086519.1:g.151G>T
  • NM_001363669.2:c.290G>T
  • NM_001363670.2:c.401G>T
  • NM_006888.6:c.398G>TMANE SELECT
  • NP_001350598.1:p.Gly97Val
  • NP_001350599.1:p.Gly134Val
  • NP_008819.1:p.Gly133Val
  • NC_000014.8:g.90870835G>T
  • NM_006888.4:c.398G>T
Protein change:
G133V
Molecular consequence:
  • NM_001363669.2:c.290G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363670.2:c.401G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006888.6:c.398G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Long QT syndrome (LQTS)
Identifiers:
MONDO: MONDO:0002442; MeSH: D008133; MedGen: C0023976

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV005200561Lildballe Lab, Aarhus University Hospital
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Mar 1, 2024)
germlineresearch

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Improving medication understanding among Latinos through illustrated medication lists.

Mohan A, Riley B, Schmotzer B, Boyington DR, Kripalani S.

Am J Manag Care. 2014 Dec 1;20(12):e547-55.

PubMed [citation]
PMID:
25741871

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753
See all PubMed Citations (3)

Details of each submission

From Lildballe Lab, Aarhus University Hospital, SCV005200561.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (3)

Description

PM2(sup), PM5(m), PM1(s), PP2(sup), PP3(sup)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 18, 2024