VCV001098890.2 - ClinVar

NM_058216.3(RAD51C):c.-13_14del (p.Met1_Thr5del)

Germline

Classification

The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.

(1)

Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.

Pathogenic

criteria provided, single submitter

Somatic

No data submitted for somatic clinical impact

Somatic

No data submitted for oncogenicity

Variant Details

Identifiers

NM_058216.3(RAD51C):c.-13_14del (p.Met1_Thr5del)

Variation ID: 1098890 Accession: VCV001098890.2

Type and length

Deletion, 27 bp

Location

Cytogenetic: 17q22 17: 58692630-58692656 (GRCh38) [ NCBI UCSC ] 17: 56769991-56770017 (GRCh37) [ NCBI UCSC ]

Timeline in ClinVar

	First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.	Last submission Help The date of the most recent submission for each type of classification for this variant.	Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline	Nov 20, 2021	Sep 3, 2023	May 3, 2021

HGVS

Nucleotide	Protein	Molecular consequence
NM_058216.3:c.-13_14del MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.	NP_478123.1:p.Met1_Thr5del	inframe deletion initiator codon variant
NM_002876.4:c.-13_14del	NP_002867.1:p.Met1_Thr5del	inframe deletion initiator codon variant
NR_103872.2:n.30_56del		non-coding transcript variant
NR_103873.1:n.59_85del		non-coding transcript variant
NC_000017.11:g.58692631_58692657del
NC_000017.10:g.56769992_56770018del
NG_023199.1:g.5030_5056del
NG_047169.1:g.4424_4450del
LRG_314:g.5030_5056del

... more HGVS ... less HGVS

Protein change

Other names

Canonical SPDI

NC_000017.11:58692629:CAGGTGAGCCTGCGATGCGCGGGAAGAC:C

Functional consequence Help The effect of the variant on RNA or protein function, based on experimental evidence from submitters.

Global minor allele frequency (GMAF) Help The global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.

Allele frequency Help The frequency of the allele represented by this VCV record.

Links

dbSNP: rs2143670048 VarSome

Genes

Gene	OMIM	ClinGen Gene Dosage Sensitivity Curation		Variation Viewer Help Links to Variation Viewer, a genome browser to view variation data from NCBI databases.	Related variants
Gene	OMIM	HI score Help The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team.	TS score Help The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team.		Within gene Help The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants.	All Help The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene.
RAD51C		Sufficient evidence for dosage pathogenicity	No evidence available	GRCh38 GRCh37	1858	2067

Conditions - Germline

Condition Help The condition for this variant-condition (RCV) record in ClinVar.	Classification Help The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions)	Review status Help The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status.	Last evaluated Help The most recent date that a submitter evaluated this variant for the condition.	Variation/condition record Help The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page.
Breast-ovarian cancer, familial, susceptibility to, 3	Pathogenic (1)	criteria provided, single submitter	May 3, 2021	RCV001779190.2

Submissions - Germline

Classification Help The submitted germline classification for each SCV record. (Last evaluated)	Review status Help Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria)	Condition Help The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant.	Submitter Help The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar.	More information Help This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter.
Pathogenic (May 03, 2021)	criteria provided, single submitter (ACMG Guidelines, 2015) Method: curation	Breast-ovarian cancer, familial, susceptibility to, 3 Affected status: unknown Allele origin: germline	Hereditary Cancer Group, L’Institut d'Investigació Biomèdica de Bellvitge Accession: SCV001623523.2 First in ClinVar: Nov 20, 2021 Last updated: Sep 03, 2023	Publications: PubMed (1) PubMed: 21750962

Germline Functional Evidence

There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for germline classification of this variant

Title	Author	Journal	Year	Link
Further evidence for the contribution of the RAD51C gene in hereditary breast and ovarian cancer susceptibility.	Vuorela M	Breast cancer research and treatment	2011	PMID: 21750962

Text-mined citations for rs2143670048 ...

These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Jun 23, 2024

ClinVar Genomic variation as it relates to human health

NM_058216.3(RAD51C):c.-13_14del (p.Met1_Thr5del)

Variant Details

Genes

Conditions - Germline

Submissions - Germline

Germline Functional Evidence

Citations for germline classification of this variant

Text-mined citations for rs2143670048 ...