ClinVar Genomic variation as it relates to human health
NM_001368894.2(PAX6):c.1231A>T (p.Ile411Phe)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001368894.2(PAX6):c.1231A>T (p.Ile411Phe)
Variation ID: 1709908 Accession: VCV001709908.1
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 11p13 11: 31790014 (GRCh38) [ NCBI UCSC ] 11: 31811562 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Oct 15, 2022 Oct 15, 2022 Oct 14, 2021 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001368894.2:c.1231A>T MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001355823.1:p.Ile411Phe missense NM_019040.5:c.*6490T>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
3 prime UTR NM_000280.6:c.1189A>T NP_000271.1:p.Ile397Phe missense NM_001127612.3:c.1189A>T NP_001121084.1:p.Ile397Phe missense NM_001258462.3:c.1231A>T NP_001245391.1:p.Ile411Phe missense NM_001258463.2:c.1231A>T NP_001245392.1:p.Ile411Phe missense NM_001258464.2:c.1189A>T NP_001245393.1:p.Ile397Phe missense NM_001258465.3:c.1189A>T NP_001245394.1:p.Ile397Phe missense NM_001288725.2:c.*6476T>A 3 prime UTR NM_001288726.2:c.*6585T>A 3 prime UTR NM_001310158.2:c.1231A>T NP_001297087.1:p.Ile411Phe missense NM_001310160.2:c.781A>T NP_001297089.1:p.Ile261Phe missense NM_001310161.3:c.781A>T NP_001297090.1:p.Ile261Phe missense NM_001368887.2:c.1189A>T NP_001355816.1:p.Ile397Phe missense NM_001368888.2:c.1189A>T NP_001355817.1:p.Ile397Phe missense NM_001368889.2:c.1189A>T NP_001355818.1:p.Ile397Phe missense NM_001368890.2:c.1189A>T NP_001355819.1:p.Ile397Phe missense NM_001368891.2:c.1189A>T NP_001355820.1:p.Ile397Phe missense NM_001368892.2:c.1231A>T NP_001355821.1:p.Ile411Phe missense NM_001368893.2:c.1231A>T NP_001355822.1:p.Ile411Phe missense NM_001368899.2:c.781A>T NP_001355828.1:p.Ile261Phe missense NM_001368900.2:c.781A>T NP_001355829.1:p.Ile261Phe missense NM_001368901.2:c.781A>T NP_001355830.1:p.Ile261Phe missense NM_001368902.2:c.781A>T NP_001355831.1:p.Ile261Phe missense NM_001368903.2:c.781A>T NP_001355832.1:p.Ile261Phe missense NM_001368904.2:c.781A>T NP_001355833.1:p.Ile261Phe missense NM_001368905.2:c.781A>T NP_001355834.1:p.Ile261Phe missense NM_001368906.2:c.781A>T NP_001355835.1:p.Ile261Phe missense NM_001368907.2:c.781A>T NP_001355836.1:p.Ile261Phe missense NM_001368908.2:c.781A>T NP_001355837.1:p.Ile261Phe missense NM_001368909.2:c.781A>T NP_001355838.1:p.Ile261Phe missense NM_001368910.2:c.1432A>T NP_001355839.1:p.Ile478Phe missense NM_001368911.2:c.1083A>T NP_001355840.1:p.Ser361= synonymous NM_001368912.2:c.1080A>T NP_001355841.1:p.Ser360= synonymous NM_001368913.2:c.1080A>T NP_001355842.1:p.Ser360= synonymous NM_001368914.2:c.1080A>T NP_001355843.1:p.Ser360= synonymous NM_001368915.2:c.1038A>T NP_001355844.1:p.Ser346= synonymous NM_001368916.2:c.1038A>T NP_001355845.1:p.Ser346= synonymous NM_001368917.2:c.1038A>T NP_001355846.1:p.Ser346= synonymous NM_001368918.2:c.1306A>T NP_001355847.1:p.Ile436Phe missense NM_001368919.2:c.1306A>T NP_001355848.1:p.Ile436Phe missense NM_001368920.2:c.1264A>T NP_001355849.1:p.Ile422Phe missense NM_001368921.2:c.879A>T NP_001355850.1:p.Ser293= synonymous NM_001368922.2:c.1030A>T NP_001355851.1:p.Ile344Phe missense NM_001368923.2:c.1030A>T NP_001355852.1:p.Ile344Phe missense NM_001368924.2:c.1030A>T NP_001355853.1:p.Ile344Phe missense NM_001368925.2:c.1030A>T NP_001355854.1:p.Ile344Phe missense NM_001368926.2:c.1030A>T NP_001355855.1:p.Ile344Phe missense NM_001368927.2:c.1030A>T NP_001355856.1:p.Ile344Phe missense NM_001368928.2:c.988A>T NP_001355857.1:p.Ile330Phe missense NM_001368929.2:c.630A>T NP_001355858.1:p.Ser210= synonymous NM_001368930.2:c.586A>T NP_001355859.1:p.Ile196Phe missense NM_001604.6:c.1231A>T NP_001595.2:p.Ile411Phe missense NR_160916.2:n.1419A>T non-coding transcript variant NR_160917.2:n.1575A>T non-coding transcript variant NC_000011.10:g.31790014T>A NC_000011.9:g.31811562T>A NG_008679.1:g.32948A>T NG_034086.2:g.285249T>A LRG_720:g.32948A>T LRG_720t1:c.1189A>T LRG_720p1:p.Ile397Phe - Protein change
- I196F, I261F, I330F, I344F, I397F, I411F, I422F, I436F, I478F
- Other names
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- Canonical SPDI
- NC_000011.10:31790013:T:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
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The frequency of the allele represented by this VCV record.
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- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
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Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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| HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
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The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
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The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
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The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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| PAX6 | Sufficient evidence for dosage pathogenicity | Little evidence for dosage pathogenicity |
GRCh38 GRCh37 |
698 | 902 | |
| ELP4 | - | - |
GRCh38 GRCh37 |
62 | 288 | |
Conditions - Germline
| Condition
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The condition for this variant-condition (RCV) record in ClinVar. |
Classification
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The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
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The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
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The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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| Uncertain significance (1) |
criteria provided, single submitter
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Oct 14, 2021 | RCV002290250.2 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
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The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
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The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
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This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Uncertain significance
(Oct 14, 2021)
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criteria provided, single submitter
Method: clinical testing
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Aniridia 1
Affected status: yes
Allele origin:
germline
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MGZ Medical Genetics Center
Accession: SCV002579492.1
First in ClinVar: Oct 15, 2022 Last updated: Oct 15, 2022
Comment:
ACMG criteria applied: PM2_SUP, PP3
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Number of individuals with the variant: 1
Sex: male
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Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
Help| There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for this variant ...
HelpRecord last updated Sep 01, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.