| | LOC130009365, LOC130009366 +5 more | Deletion | Charlevoix-Saguenay spastic ataxia | |
| | SACS, SACS-AS1 (R1498P +1 more) | Single nucleotide variant (missense variant) | Charlevoix-Saguenay spastic ataxia | |
| | LOC130009362, LOC130009363 +57 more | Deletion | See cases | |
| | LOC130009386, LOC130009387 +55 more | Deletion | Schizophrenia | |
| | LOC126861859, LOC126861860 +2025 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | LOC130009607, LOC130009608 +2029 more | Copy number gain | See cases | |
| | LOC126861730, LOC126861731 +489 more | Copy number gain | See cases | |
| | C1QTNF9, C1QTNF9B +57 more | Copy number gain | See cases | |
| | LOC130009892, LOC130009893 +2050 more | Copy number gain | See cases | |
| | C1QTNF9, C1QTNF9B +57 more | Copy number gain | See cases | |
| | C1QTNF9, C1QTNF9B +55 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | C1QTNF9, C1QTNF9B +57 more | Copy number gain | See cases | Gconflicting data from submitters |
| | C1QTNF9, C1QTNF9B +55 more | Copy number gain | See cases | |
| | LOC132090185, LOC132090186 +621 more | Copy number gain | See cases | |
| | LINC00327, LINC00362 +16 more | Copy number loss | See cases | |
| | LINC00327, LINC00362 +21 more | Copy number loss | See cases | |
| | C1QTNF9, C1QTNF9B +62 more | Copy number gain | See cases | |
| | ATP8A2, ATXN8OS +2049 more | Copy number loss | See cases | |
| | C1QTNF9B, LINC00327 +47 more | Copy number loss | See cases | |
| | LOC130009383, LOC130009384 +2022 more | Copy number gain | See cases | |
| | C1QTNF9, C1QTNF9B +55 more | Copy number loss | See cases | |
| | LINC00327, LINC00362 +33 more | Copy number loss | See cases | |
| | LOC112163664, LOC112163665 +2025 more | Copy number gain | See cases | |
| | LOC130009490, LOC130009491 +416 more | Copy number gain | See cases | |
| | LOC130009309, LOC130009310 +2041 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC130009419, LOC130009420 +567 more | Copy number gain | See cases | |
| | LOC130009819, LOC130009820 +2048 more | Copy number gain | See cases | |
| | LINC00327, LINC00362 +16 more | Copy number loss | See cases | |
| | LINC00327, LOC130009362 +23 more | Copy number gain | See cases | |
| | LINC00327, LINC00362 +21 more | Copy number gain | See cases | |
| | C1QTNF9, C1QTNF9B +55 more | Copy number gain | See cases | |
| | C1QTNF9B, LINC00327 +55 more | Copy number gain | See cases | |
| | C1QTNF9, C1QTNF9B +54 more | Copy number loss | See cases | |
| | C1QTNF9, C1QTNF9B +55 more | Copy number gain | See cases | |