| | | Single nucleotide variant (splice donor variant) | PKHD1L1-related disorder | |
| | LOC126860473, PKHD1L1 (Q4100R) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (S4103L) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (V4114L) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (C4113S) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (V4074I) | Single nucleotide variant (missense variant) | not specified | |
| | | Single nucleotide variant (splice donor variant) | not provided | |
| | LOC126860473, PKHD1L1 (V4135L) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (S4035N) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (V4067G) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (G4117V) | Single nucleotide variant (missense variant) | not specified | |
| | LOC126860473, PKHD1L1 (I4047N) | Single nucleotide variant (missense variant) | not specified | |
| | LOC105375713, LOC105375742 +1553 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC130001173, LOC130001174 +1068 more | Copy number gain | See cases | |
| | LOC126860535, LOC126860536 +1687 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC129999966, LOC129999967 +3111 more | Copy number gain | See cases | |
| | LOC126860438, LOC126860439 +3663 more | Copy number gain | See cases | |
| | LOC130000987, LOC130000988 +1205 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC126860489, LOC126860490 +1963 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC130001109, LOC130001110 +1532 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC130001226, LOC130001227 +1407 more | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC105379224, LOC105379230 +3657 more | Copy number gain | See cases | |