| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (P12A) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (G21V) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (K52E) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Duplication | PGM1-congenital disorder of glycosylation | |
| | LOC126805746, TM2D1 (V26L) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (G41A) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Copy number loss | not specified | |
| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Copy number loss | Brain malformations with or without urinary tract defects | |
| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Deletion | not provided | |
| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (S10F) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (W33G) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (V20I) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Single nucleotide variant (missense variant +1 more) | not specified | |
| | LOC126805746, TM2D1 (E49G) | Single nucleotide variant (missense variant +1 more) | not specified | |
| | | Copy number gain | not provided | |
| | | Copy number loss | Chromosome 1p32-p31 deletion syndrome | |
| | | Deletion | Intellectual disability, severe | |
| | | Copy number gain | Intellectual disability, mild +1 more | |
| | | Copy number gain | See cases | |
| | GPATCH2, GPATCH3 +2014 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number gain | See cases | |
| | LOC110121050, LOC110121108 +14 more | Copy number gain | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | DEPDC1, DEPDC1-AS1 +270 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC111501769, LOC112590812 +339 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | LOC122094841, LOC122094842 +253 more | Copy number loss | See cases | |