taxonomy

Name

dataformat excel taxonomy - Convert Taxonomy Report into an Excel workbook

Synopsis

dataformat excel taxonomy [flags]

Description

Convert Taxonomy Report into an Excel workbook.

Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.

Examples

  dataformat excel taxonomy --inputfile taxonomy_package/ncbi_dataset/data/taxonomy_report.jsonl --outputfile taxonomy.xlsx
  dataformat excel taxonomy --package taxonomy-package.zip --outputfile taxonomy.xlsx

Options

      --fields strings      Comma-separated list of fields
      --force               Force dataformat to run without type check prompt
  -h, --help                help for taxonomy
      --inputfile string    Input file (default "/dev/stdin")
      --outputfile string   Excel workbook file
      --package string      Data package (zip archive), inputfile parameter is relative to the root path inside the archive