Virus annotation report

Virus record identifiers, sample information, genomic locations, and products

Virus annotation report

Virus record identifiers, sample information, genomic locations, and products

The downloaded virus package contains a virus annotation report in JSON Lines format in the file:

ncbi_dataset/data/annotation_report.jsonl

Each line of the virus annotation report file is a hierarchical JSON object that represents a single virus record. The schema of the virus record is defined in the tables below where each row describes a single field in the report or a sub-structure, which is a collection of fields. The outermost structure of the report is VirusAssembly.

Table fields that include a Table Field Mnemonic can be used with the dataformat command-line tool's --fields option. Refer to the dataformat CLI tool reference to see how you can use this tool to transform virus annotation reports from JSON Lines to tabular formats.

Sample report

{
  "accession": "NC_045512.2",
  "genes": [
    {
      "cds": [
        {
          "maturePeptide": [
            {
              "accession": "YP_009725297.1",
              "cdd": [
                {
                  "accession": "CDD:288369",
                  "name": "Non structural protein Nsp1",
                  "range": {
                    "begin": "13",
                    "end": "127"
                  }
                }
              ],
              "name": "leader protein",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "266",
                    "end": "805"
                  }
                ],
                "seqId": "NC_045512.2:266-805",
                "sequenceHash": "BFEE0830",
                "title": "leader protein [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "leader protein",
                "non-structural protein 1",
                "nonstructural protein 1",
                "nsp1"
              ],
              "protein": {
                "accessionVersion": "YP_009725297.1",
                "seqId": "YP_009725297.1",
                "sequenceHash": "DFF407F9",
                "title": "leader protein [polyprotein_range=YP_009724389.1:1-180] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725298.1",
              "name": "nsp2",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "806",
                    "end": "2719"
                  }
                ],
                "seqId": "NC_045512.2:806-2719",
                "sequenceHash": "E741D86",
                "title": "nsp2 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 2",
                "nonstructural protein 2",
                "nsp2"
              ],
              "protein": {
                "accessionVersion": "YP_009725298.1",
                "seqId": "YP_009725298.1",
                "sequenceHash": "58F71ADE",
                "title": "nsp2 [polyprotein_range=YP_009724389.1:181-818] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725299.1",
              "cdd": [
                {
                  "accession": "CDD:289172",
                  "name": "Protein of unknown function (DUF3655)",
                  "range": {
                    "begin": "102",
                    "end": "169"
                  }
                },
                {
                  "accession": "CDD:366746",
                  "name": "Macro domain",
                  "range": {
                    "begin": "240",
                    "end": "340"
                  }
                },
                {
                  "accession": "CDD:314498",
                  "name": "Single-stranded poly(A) binding domain",
                  "range": {
                    "begin": "533",
                    "end": "675"
                  }
                },
                {
                  "accession": "CDD:288939",
                  "name": "Coronavirus polyprotein cleavage domain",
                  "range": {
                    "begin": "680",
                    "end": "743"
                  }
                },
                {
                  "accession": "CDD:370080",
                  "name": "Papain like viral protease",
                  "range": {
                    "begin": "746",
                    "end": "1064"
                  }
                },
                {
                  "accession": "CDD:292868",
                  "name": "Nucleic acid-binding domain (NAR)",
                  "range": {
                    "begin": "1089",
                    "end": "1201"
                  }
                },
                {
                  "accession": "CDD:391938",
                  "name": "even-transmembrane G protein-coupled receptor",
                  "range": {
                    "begin": "1494",
                    "end": "1563"
                  }
                },
                {
                  "accession": "CDD:341315",
                  "name": "TM helix 5 [structural motif]",
                  "range": {
                    "begin": "1497",
                    "end": "1519"
                  }
                },
                {
                  "accession": "CDD:341315",
                  "name": "TM helix 6 [structural motif]",
                  "range": {
                    "begin": "1527",
                    "end": "1551"
                  }
                }
              ],
              "name": "nsp3",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "2720",
                    "end": "8554"
                  }
                ],
                "seqId": "NC_045512.2:2720-8554",
                "sequenceHash": "6A235ABB",
                "title": "nsp3 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 3",
                "nonstructural protein 3",
                "nsp3"
              ],
              "protein": {
                "accessionVersion": "YP_009725299.1",
                "seqId": "YP_009725299.1",
                "sequenceHash": "21B55819",
                "title": "nsp3 [polyprotein_range=YP_009724389.1:819-2763] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725300.1",
              "cdd": [
                {
                  "accession": "CDD:374495",
                  "name": "Coronavirus nonstructural protein 4 C-terminus",
                  "range": {
                    "begin": "406",
                    "end": "498"
                  }
                }
              ],
              "name": "nsp4",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "8555",
                    "end": "10054"
                  }
                ],
                "seqId": "NC_045512.2:8555-10054",
                "sequenceHash": "4BA01958",
                "title": "nsp4 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 4",
                "nonstructural protein 4",
                "nsp4"
              ],
              "protein": {
                "accessionVersion": "YP_009725300.1",
                "seqId": "YP_009725300.1",
                "sequenceHash": "2C781714",
                "title": "nsp4 [polyprotein_range=YP_009724389.1:2764-3263] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725301.1",
              "cdd": [
                {
                  "accession": "CDD:368429",
                  "name": "Coronavirus endopeptidase C30",
                  "range": {
                    "begin": "29",
                    "end": "306"
                  }
                }
              ],
              "name": "3C-like proteinase",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "10055",
                    "end": "10972"
                  }
                ],
                "seqId": "NC_045512.2:10055-10972",
                "sequenceHash": "C28D0EE5",
                "title": "3C-like proteinase [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "3C-like proteinase",
                "3CLpro",
                "Mpro",
                "main proteinase",
                "non-structural protein 5",
                "nonstructural protein 5",
                "nsp5A_3CLpro",
                "nsp5B_3CLpro"
              ],
              "protein": {
                "accessionVersion": "YP_009725301.1",
                "seqId": "YP_009725301.1",
                "sequenceHash": "5CE30DBB",
                "title": "3C-like proteinase [polyprotein_range=YP_009724389.1:3264-3569] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725302.1",
              "name": "nsp6",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "10973",
                    "end": "11842"
                  }
                ],
                "seqId": "NC_045512.2:10973-11842",
                "sequenceHash": "99170F63",
                "title": "nsp6 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 6",
                "nonstructural protein 6",
                "nsp6"
              ],
              "protein": {
                "accessionVersion": "YP_009725302.1",
                "seqId": "YP_009725302.1",
                "sequenceHash": "A72B0D80",
                "title": "nsp6 [polyprotein_range=YP_009724389.1:3570-3859] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725303.1",
              "cdd": [
                {
                  "accession": "CDD:285878",
                  "name": "nsp7 replicase",
                  "range": {
                    "begin": "1",
                    "end": "83"
                  }
                }
              ],
              "name": "nsp7",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "11843",
                    "end": "12091"
                  }
                ],
                "seqId": "NC_045512.2:11843-12091",
                "sequenceHash": "DDAA03C2",
                "title": "nsp7 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 7",
                "nonstructural protein 7",
                "nsp7"
              ],
              "protein": {
                "accessionVersion": "YP_009725303.1",
                "seqId": "YP_009725303.1",
                "sequenceHash": "A87703C6",
                "title": "nsp7 [polyprotein_range=YP_009724389.1:3860-3942] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725304.1",
              "cdd": [
                {
                  "accession": "CDD:285879",
                  "name": "nsp8 replicase",
                  "range": {
                    "begin": "1",
                    "end": "198"
                  }
                }
              ],
              "name": "nsp8",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "12092",
                    "end": "12685"
                  }
                ],
                "seqId": "NC_045512.2:12092-12685",
                "sequenceHash": "759508E4",
                "title": "nsp8 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 8",
                "nonstructural protein 8",
                "nsp8"
              ],
              "protein": {
                "accessionVersion": "YP_009725304.1",
                "seqId": "YP_009725304.1",
                "sequenceHash": "27D30877",
                "title": "nsp8 [polyprotein_range=YP_009724389.1:3943-4140] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725305.1",
              "cdd": [
                {
                  "accession": "CDD:285872",
                  "name": "nsp9 replicase",
                  "range": {
                    "begin": "1",
                    "end": "113"
                  }
                }
              ],
              "name": "nsp9",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "12686",
                    "end": "13024"
                  }
                ],
                "seqId": "NC_045512.2:12686-13024",
                "sequenceHash": "66A7051A",
                "title": "nsp9 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 9",
                "nonstructural protein 9",
                "nsp9",
                "ssRNA-binding protein"
              ],
              "protein": {
                "accessionVersion": "YP_009725305.1",
                "seqId": "YP_009725305.1",
                "sequenceHash": "1A720513",
                "title": "nsp9 [polyprotein_range=YP_009724389.1:4141-4253] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725306.1",
              "cdd": [
                {
                  "accession": "CDD:286486",
                  "name": "RNA synthesis protein NSP10",
                  "range": {
                    "begin": "12",
                    "end": "131"
                  }
                }
              ],
              "name": "nsp10",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "13025",
                    "end": "13441"
                  }
                ],
                "seqId": "NC_045512.2:13025-13441",
                "sequenceHash": "4B5A0671",
                "title": "nsp10 [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "GFL",
                "growth-factor-like protein",
                "non-structural protein 10",
                "nonstructural protein 10",
                "nsp10"
              ],
              "protein": {
                "accessionVersion": "YP_009725306.1",
                "seqId": "YP_009725306.1",
                "sequenceHash": "839705B4",
                "title": "nsp10 [polyprotein_range=YP_009724389.1:4254-4392] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725307.1",
              "cdd": [
                {
                  "accession": "CDD:284009",
                  "name": "Coronavirus RPol N-terminus",
                  "range": {
                    "begin": "14",
                    "end": "366"
                  }
                }
              ],
              "name": "RNA-dependent RNA polymerase",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "13442",
                    "end": "13468"
                  },
                  {
                    "begin": "13468",
                    "end": "16236"
                  }
                ],
                "seqId": "NC_045512.2:13442-13468,13468-16236",
                "sequenceHash": "74392C07",
                "title": "RNA-dependent RNA polymerase [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "NiRAN",
                "RNA-dependent RNA polymerase",
                "RdRp",
                "non-structural protein 12",
                "nonstructural protein 12",
                "nsp12"
              ],
              "protein": {
                "accessionVersion": "YP_009725307.1",
                "seqId": "YP_009725307.1",
                "sequenceHash": "6D522979",
                "title": "RNA-dependent RNA polymerase [polyprotein_range=YP_009724389.1:4393-5324] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725308.1",
              "cdd": [
                {
                  "accession": "CDD:350692",
                  "name": "DEXXQ-box helicase domain of Upf1-like helicase",
                  "range": {
                    "begin": "272",
                    "end": "443"
                  }
                },
                {
                  "accession": "CDD:224037",
                  "name": "Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]",
                  "range": {
                    "begin": "323",
                    "end": "592"
                  }
                }
              ],
              "name": "helicase",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "16237",
                    "end": "18039"
                  }
                ],
                "seqId": "NC_045512.2:16237-18039",
                "sequenceHash": "6CA71C02",
                "title": "helicase [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "helicase",
                "non-structural protein 13",
                "nonstructural protein 13"
              ],
              "protein": {
                "accessionVersion": "YP_009725308.1",
                "seqId": "YP_009725308.1",
                "sequenceHash": "17B91B6E",
                "title": "helicase [polyprotein_range=YP_009724389.1:5325-5925] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725309.1",
              "cdd": [
                {
                  "accession": "CDD:284002",
                  "name": "pfam06471",
                  "range": {
                    "begin": "3",
                    "end": "527"
                  }
                }
              ],
              "name": "3'-to-5' exonuclease",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "18040",
                    "end": "19620"
                  }
                ],
                "seqId": "NC_045512.2:18040-19620",
                "sequenceHash": "444B1903",
                "title": "3'-to-5' exonuclease [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "3'-to-5' exonuclease",
                "non-structural protein 14",
                "nonstructural protein 14",
                "nsp14"
              ],
              "protein": {
                "accessionVersion": "YP_009725309.1",
                "seqId": "YP_009725309.1",
                "sequenceHash": "8ED173E",
                "title": "3'-to-5' exonuclease [polyprotein_range=YP_009724389.1:5926-6452] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725310.1",
              "cdd": [
                {
                  "accession": "CDD:284002",
                  "name": "pfam06471",
                  "range": {
                    "begin": "1",
                    "end": "68"
                  }
                }
              ],
              "name": "endoRNAse",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "19621",
                    "end": "20658"
                  }
                ],
                "seqId": "NC_045512.2:19621-20658",
                "sequenceHash": "C4DC1059",
                "title": "endoRNAse [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "endoRNAse",
                "non-structural protein 15",
                "nonstructural protein 15",
                "nsp15"
              ],
              "protein": {
                "accessionVersion": "YP_009725310.1",
                "seqId": "YP_009725310.1",
                "sequenceHash": "76160F5B",
                "title": "endoRNAse [polyprotein_range=YP_009724389.1:6453-6798] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725311.1",
              "cdd": [
                {
                  "accession": "CDD:368920",
                  "name": "Coronavirus NSP13",
                  "range": {
                    "begin": "2",
                    "end": "297"
                  }
                }
              ],
              "name": "2'-O-ribose methyltransferase",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "20659",
                    "end": "21552"
                  }
                ],
                "seqId": "NC_045512.2:20659-21552",
                "sequenceHash": "58050E29",
                "title": "2'-O-ribose methyltransferase [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "2'-o-MT",
                "2'-o-ribose methyltransferase",
                "non-structural protein 16",
                "nonstructural protein 16",
                "nsp16",
                "nsp16_OMT"
              ],
              "protein": {
                "accessionVersion": "YP_009725311.1",
                "seqId": "YP_009725311.1",
                "sequenceHash": "D5F30D79",
                "title": "2'-O-ribose methyltransferase [polyprotein_range=YP_009724389.1:6799-7096] [polyprotein=ORF1ab polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            }
          ],
          "name": "ORF1ab polyprotein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "266",
                "end": "13468"
              },
              {
                "begin": "13468",
                "end": "21555"
              }
            ],
            "seqId": "NC_045512.2:266-13468,13468-21555",
            "sequenceHash": "9F004FDB",
            "title": "ORF1ab polyprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "ORF1ab",
            "ORF1ab polyprotein",
            "open reading frame 1",
            "open reading frame 1ab",
            "orf1",
            "orf1b",
            "polyprotein 1ab",
            "pp1ab"
          ],
          "protein": {
            "accessionVersion": "YP_009724389.1",
            "range": [
              {
                "begin": "1",
                "end": "7096"
              }
            ],
            "seqId": "YP_009724389.1:1-7096",
            "sequenceHash": "89013D3D",
            "title": "ORF1ab polyprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTD1",
            "name": "Replicase polyprotein 1ab"
          }
        },
        {
          "maturePeptide": [
            {
              "accession": "YP_009742608.1",
              "cdd": [
                {
                  "accession": "CDD:288369",
                  "name": "Non structural protein Nsp1",
                  "range": {
                    "begin": "13",
                    "end": "127"
                  }
                }
              ],
              "name": "leader protein",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "266",
                    "end": "805"
                  }
                ],
                "sequenceHash": "BFEE0830"
              },
              "otherNames": [
                "leader protein",
                "non-structural protein 1",
                "nonstructural protein 1",
                "nsp1"
              ],
              "protein": {
                "accessionVersion": "YP_009742608.1",
                "seqId": "YP_009742608.1",
                "sequenceHash": "DFF407F9",
                "title": "leader protein [polyprotein_range=YP_009725295.1:1-180] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742609.1",
              "name": "nsp2",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "806",
                    "end": "2719"
                  }
                ],
                "sequenceHash": "E741D86"
              },
              "otherNames": [
                "non-structural protein 2",
                "nonstructural protein 2",
                "nsp2"
              ],
              "protein": {
                "accessionVersion": "YP_009742609.1",
                "seqId": "YP_009742609.1",
                "sequenceHash": "58F71ADE",
                "title": "nsp2 [polyprotein_range=YP_009725295.1:181-818] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742610.1",
              "cdd": [
                {
                  "accession": "CDD:289172",
                  "name": "Protein of unknown function (DUF3655)",
                  "range": {
                    "begin": "102",
                    "end": "169"
                  }
                },
                {
                  "accession": "CDD:366746",
                  "name": "Macro domain",
                  "range": {
                    "begin": "240",
                    "end": "340"
                  }
                },
                {
                  "accession": "CDD:314498",
                  "name": "Single-stranded poly(A) binding domain",
                  "range": {
                    "begin": "533",
                    "end": "675"
                  }
                },
                {
                  "accession": "CDD:288939",
                  "name": "Coronavirus polyprotein cleavage domain",
                  "range": {
                    "begin": "680",
                    "end": "743"
                  }
                },
                {
                  "accession": "CDD:370080",
                  "name": "Papain like viral protease",
                  "range": {
                    "begin": "746",
                    "end": "1064"
                  }
                },
                {
                  "accession": "CDD:292868",
                  "name": "Nucleic acid-binding domain (NAR)",
                  "range": {
                    "begin": "1089",
                    "end": "1201"
                  }
                },
                {
                  "accession": "CDD:391938",
                  "name": "even-transmembrane G protein-coupled receptor",
                  "range": {
                    "begin": "1494",
                    "end": "1563"
                  }
                },
                {
                  "accession": "CDD:341315",
                  "name": "TM helix 5 [structural motif]",
                  "range": {
                    "begin": "1497",
                    "end": "1519"
                  }
                },
                {
                  "accession": "CDD:341315",
                  "name": "TM helix 6 [structural motif]",
                  "range": {
                    "begin": "1527",
                    "end": "1551"
                  }
                }
              ],
              "name": "nsp3",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "2720",
                    "end": "8554"
                  }
                ],
                "sequenceHash": "6A235ABB"
              },
              "otherNames": [
                "non-structural protein 3",
                "nonstructural protein 3",
                "nsp3"
              ],
              "protein": {
                "accessionVersion": "YP_009742610.1",
                "seqId": "YP_009742610.1",
                "sequenceHash": "21B55819",
                "title": "nsp3 [polyprotein_range=YP_009725295.1:819-2763] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742611.1",
              "cdd": [
                {
                  "accession": "CDD:374495",
                  "name": "Coronavirus nonstructural protein 4 C-terminus",
                  "range": {
                    "begin": "406",
                    "end": "498"
                  }
                }
              ],
              "name": "nsp4",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "8555",
                    "end": "10054"
                  }
                ],
                "sequenceHash": "4BA01958"
              },
              "otherNames": [
                "non-structural protein 4",
                "nonstructural protein 4",
                "nsp4"
              ],
              "protein": {
                "accessionVersion": "YP_009742611.1",
                "seqId": "YP_009742611.1",
                "sequenceHash": "2C781714",
                "title": "nsp4 [polyprotein_range=YP_009725295.1:2764-3263] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742612.1",
              "cdd": [
                {
                  "accession": "CDD:368429",
                  "name": "Coronavirus endopeptidase C30",
                  "range": {
                    "begin": "29",
                    "end": "306"
                  }
                }
              ],
              "name": "3C-like proteinase",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "10055",
                    "end": "10972"
                  }
                ],
                "sequenceHash": "C28D0EE5"
              },
              "otherNames": [
                "3C-like proteinase",
                "3CLpro",
                "Mpro",
                "main proteinase",
                "non-structural protein 5",
                "nonstructural protein 5",
                "nsp5A_3CLpro",
                "nsp5B_3CLpro"
              ],
              "protein": {
                "accessionVersion": "YP_009742612.1",
                "seqId": "YP_009742612.1",
                "sequenceHash": "5CE30DBB",
                "title": "3C-like proteinase [polyprotein_range=YP_009725295.1:3264-3569] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742613.1",
              "name": "nsp6",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "10973",
                    "end": "11842"
                  }
                ],
                "sequenceHash": "99170F63"
              },
              "otherNames": [
                "non-structural protein 6",
                "nonstructural protein 6",
                "nsp6"
              ],
              "protein": {
                "accessionVersion": "YP_009742613.1",
                "seqId": "YP_009742613.1",
                "sequenceHash": "A72B0D80",
                "title": "nsp6 [polyprotein_range=YP_009725295.1:3570-3859] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742614.1",
              "cdd": [
                {
                  "accession": "CDD:285878",
                  "name": "nsp7 replicase",
                  "range": {
                    "begin": "1",
                    "end": "83"
                  }
                }
              ],
              "name": "nsp7",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "11843",
                    "end": "12091"
                  }
                ],
                "sequenceHash": "DDAA03C2"
              },
              "otherNames": [
                "non-structural protein 7",
                "nonstructural protein 7",
                "nsp7"
              ],
              "protein": {
                "accessionVersion": "YP_009742614.1",
                "seqId": "YP_009742614.1",
                "sequenceHash": "A87703C6",
                "title": "nsp7 [polyprotein_range=YP_009725295.1:3860-3942] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742615.1",
              "cdd": [
                {
                  "accession": "CDD:285879",
                  "name": "nsp8 replicase",
                  "range": {
                    "begin": "1",
                    "end": "198"
                  }
                }
              ],
              "name": "nsp8",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "12092",
                    "end": "12685"
                  }
                ],
                "sequenceHash": "759508E4"
              },
              "otherNames": [
                "non-structural protein 8",
                "nonstructural protein 8",
                "nsp8"
              ],
              "protein": {
                "accessionVersion": "YP_009742615.1",
                "seqId": "YP_009742615.1",
                "sequenceHash": "27D30877",
                "title": "nsp8 [polyprotein_range=YP_009725295.1:3943-4140] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742616.1",
              "cdd": [
                {
                  "accession": "CDD:285872",
                  "name": "nsp9 replicase",
                  "range": {
                    "begin": "1",
                    "end": "113"
                  }
                }
              ],
              "name": "nsp9",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "12686",
                    "end": "13024"
                  }
                ],
                "sequenceHash": "66A7051A"
              },
              "otherNames": [
                "non-structural protein 9",
                "nonstructural protein 9",
                "nsp9",
                "ssRNA-binding protein"
              ],
              "protein": {
                "accessionVersion": "YP_009742616.1",
                "seqId": "YP_009742616.1",
                "sequenceHash": "1A720513",
                "title": "nsp9 [polyprotein_range=YP_009725295.1:4141-4253] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009742617.1",
              "cdd": [
                {
                  "accession": "CDD:286486",
                  "name": "RNA synthesis protein NSP10",
                  "range": {
                    "begin": "12",
                    "end": "131"
                  }
                }
              ],
              "name": "nsp10",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "13025",
                    "end": "13441"
                  }
                ],
                "sequenceHash": "4B5A0671"
              },
              "otherNames": [
                "GFL",
                "growth-factor-like protein",
                "non-structural protein 10",
                "nonstructural protein 10",
                "nsp10"
              ],
              "protein": {
                "accessionVersion": "YP_009742617.1",
                "seqId": "YP_009742617.1",
                "sequenceHash": "839705B4",
                "title": "nsp10 [polyprotein_range=YP_009725295.1:4254-4392] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            },
            {
              "accession": "YP_009725312.1",
              "name": "nsp11",
              "nucleotide": {
                "accessionVersion": "NC_045512.2",
                "range": [
                  {
                    "begin": "13442",
                    "end": "13480"
                  }
                ],
                "seqId": "NC_045512.2:13442-13480",
                "sequenceHash": "CA400AB",
                "title": "nsp11 [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "otherNames": [
                "non-structural protein 11",
                "nonstructural protein 11",
                "nsp11"
              ],
              "protein": {
                "accessionVersion": "YP_009725312.1",
                "seqId": "YP_009725312.1",
                "sequenceHash": "32B0077",
                "title": "nsp11 [polyprotein_range=YP_009725295.1:4393-4405] [polyprotein=ORF1a polyprotein] [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
              },
              "proteinCompleteness": "COMPLETE"
            }
          ],
          "name": "ORF1a polyprotein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "266",
                "end": "13483"
              }
            ],
            "seqId": "NC_045512.2:266-13483",
            "sequenceHash": "96BED0ED",
            "title": "ORF1a polyprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "ORF1a",
            "ORF1a polyprotein",
            "open reading frame 1a",
            "orf1a",
            "polyprotein 1ab",
            "pp1a"
          ],
          "protein": {
            "accessionVersion": "YP_009725295.1",
            "range": [
              {
                "begin": "1",
                "end": "4405"
              }
            ],
            "seqId": "YP_009725295.1:1-4405",
            "sequenceHash": "A6EBC4B0",
            "title": "ORF1a polyprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC1",
            "name": "Replicase polyprotein 1a"
          }
        }
      ],
      "geneId": 43740578,
      "name": "ORF1ab"
    },
    {
      "cds": [
        {
          "cdd": [
            {
              "accession": "CDD:370471",
              "name": "Spike receptor binding domain",
              "range": {
                "begin": "330",
                "end": "583"
              }
            },
            {
              "accession": "CDD:279881",
              "name": "Coronavirus S2 glycoprotein",
              "range": {
                "begin": "1",
                "end": "1273"
              }
            }
          ],
          "name": "surface glycoprotein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "21563",
                "end": "25384"
              }
            ],
            "seqId": "NC_045512.2:21563-25384",
            "sequenceHash": "B32D3CC0",
            "title": "surface glycoprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "ORF 2",
            "open reading frame 2",
            "spike",
            "spike protein",
            "surface glycoprotein"
          ],
          "protein": {
            "accessionVersion": "YP_009724390.1",
            "range": [
              {
                "begin": "1",
                "end": "1273"
              }
            ],
            "seqId": "YP_009724390.1:1-1273",
            "sequenceHash": "DF1539B0",
            "title": "surface glycoprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC2",
            "name": "spike glycoprotein"
          }
        }
      ],
      "geneId": 43740568,
      "name": "S"
    },
    {
      "cds": [
        {
          "cdd": [
            {
              "accession": "CDD:288183",
              "name": "Coronavirus accessory protein 3a",
              "range": {
                "begin": "1",
                "end": "274"
              }
            }
          ],
          "name": "ORF3a protein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "25393",
                "end": "26220"
              }
            ],
            "seqId": "NC_045512.2:25393-26220",
            "sequenceHash": "EC770D42",
            "title": "ORF3a protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "3a",
            "ORF 3a",
            "ORF3a",
            "open reading frame 3a"
          ],
          "protein": {
            "accessionVersion": "YP_009724391.1",
            "range": [
              {
                "begin": "1",
                "end": "275"
              }
            ],
            "seqId": "YP_009724391.1:1-275",
            "sequenceHash": "CA130D0F",
            "title": "ORF3a protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC3",
            "name": "Protein 3a"
          }
        }
      ],
      "geneId": 43740569,
      "name": "ORF3a"
    },
    {
      "cds": [
        {
          "name": "envelope protein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "26245",
                "end": "26472"
              }
            ],
            "seqId": "NC_045512.2:26245-26472",
            "sequenceHash": "CFFD0414",
            "title": "envelope protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "E",
            "ORF 4",
            "ORF4",
            "envelope",
            "envelope protein",
            "open reading frame 4"
          ],
          "protein": {
            "accessionVersion": "YP_009724392.1",
            "range": [
              {
                "begin": "1",
                "end": "75"
              }
            ],
            "seqId": "YP_009724392.1:1-75",
            "sequenceHash": "8A7D03C2",
            "title": "envelope protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC4",
            "name": "Envelope small membrane protein"
          }
        }
      ],
      "geneId": 43740570,
      "name": "E"
    },
    {
      "cds": [
        {
          "cdd": [
            {
              "accession": "CDD:279907",
              "name": "Coronavirus M matrix/glycoprotein",
              "range": {
                "begin": "4",
                "end": "221"
              }
            }
          ],
          "name": "membrane glycoprotein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "26523",
                "end": "27191"
              }
            ],
            "seqId": "NC_045512.2:26523-27191",
            "sequenceHash": "4A3D0AA4",
            "title": "membrane glycoprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "M",
            "ORF 5",
            "ORF5",
            "matrix glycoprotein",
            "matrix protein",
            "membrane",
            "membrane glycoprotein",
            "open reading frame 5"
          ],
          "protein": {
            "accessionVersion": "YP_009724393.1",
            "range": [
              {
                "begin": "1",
                "end": "222"
              }
            ],
            "seqId": "YP_009724393.1:1-222",
            "sequenceHash": "404E09E2",
            "title": "membrane glycoprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC5",
            "name": "Membrane protein"
          }
        }
      ],
      "geneId": 43740571,
      "name": "M"
    },
    {
      "cds": [
        {
          "cdd": [
            {
              "accession": "CDD:288948",
              "name": "Open reading frame 6 from SARS coronavirus",
              "range": {
                "begin": "1",
                "end": "61"
              }
            }
          ],
          "name": "ORF6 protein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "27202",
                "end": "27387"
              }
            ],
            "seqId": "NC_045512.2:27202-27387",
            "sequenceHash": "252702F1",
            "title": "ORF6 protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "ORF 6",
            "ORF6",
            "open reading frame 6"
          ],
          "protein": {
            "accessionVersion": "YP_009724394.1",
            "range": [
              {
                "begin": "1",
                "end": "61"
              }
            ],
            "seqId": "YP_009724394.1:1-61",
            "sequenceHash": "543902B5",
            "title": "ORF6 protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC6",
            "name": "Non-structural protein 6"
          }
        }
      ],
      "geneId": 43740572,
      "name": "ORF6"
    },
    {
      "cds": [
        {
          "cdd": [
            {
              "accession": "CDD:370117",
              "name": "SARS coronavirus X4 like",
              "range": {
                "begin": "16",
                "end": "98"
              }
            }
          ],
          "name": "ORF7a protein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "27394",
                "end": "27759"
              }
            ],
            "seqId": "NC_045512.2:27394-27759",
            "sequenceHash": "25E705AF",
            "title": "ORF7a protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "7a",
            "ORF 7a",
            "ORF7a",
            "open reading frame 7a"
          ],
          "protein": {
            "accessionVersion": "YP_009724395.1",
            "range": [
              {
                "begin": "1",
                "end": "121"
              }
            ],
            "seqId": "YP_009724395.1:1-121",
            "sequenceHash": "3B2A0535",
            "title": "ORF7a protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC7",
            "name": "Protein 7a"
          }
        }
      ],
      "geneId": 43740573,
      "name": "ORF7a"
    },
    {
      "cds": [
        {
          "name": "ORF7b",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "27756",
                "end": "27887"
              }
            ],
            "seqId": "NC_045512.2:27756-27887",
            "sequenceHash": "ADD30274",
            "title": "ORF7b [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "7b",
            "ORF 7b",
            "ORF7b",
            "open reading frame 7b"
          ],
          "protein": {
            "accessionVersion": "YP_009725318.1",
            "range": [
              {
                "begin": "1",
                "end": "43"
              }
            ],
            "seqId": "YP_009725318.1:1-43",
            "sequenceHash": "2469019F",
            "title": "ORF7b [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTD8",
            "name": "Protein non-structural 7b"
          }
        }
      ],
      "geneId": 43740574,
      "name": "ORF7b"
    },
    {
      "cds": [
        {
          "cdd": [
            {
              "accession": "CDD:152528",
              "name": "Coronavirus NS8 protein",
              "range": {
                "begin": "1",
                "end": "118"
              }
            }
          ],
          "name": "ORF8 protein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "27894",
                "end": "28259"
              }
            ],
            "seqId": "NC_045512.2:27894-28259",
            "sequenceHash": "43A50622",
            "title": "ORF8 protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "ORF 8",
            "ORF8",
            "open reading frame 8"
          ],
          "protein": {
            "accessionVersion": "YP_009724396.1",
            "range": [
              {
                "begin": "1",
                "end": "121"
              }
            ],
            "seqId": "YP_009724396.1:1-121",
            "sequenceHash": "47D40569",
            "title": "ORF8 protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC8",
            "name": "Non-structural protein 8"
          }
        }
      ],
      "geneId": 43740577,
      "name": "ORF8"
    },
    {
      "cds": [
        {
          "cdd": [
            {
              "accession": "CDD:279305",
              "name": "Coronavirus nucleocapsid protein",
              "range": {
                "begin": "14",
                "end": "368"
              }
            }
          ],
          "name": "nucleocapsid phosphoprotein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "28274",
                "end": "29533"
              }
            ],
            "seqId": "NC_045512.2:28274-29533",
            "sequenceHash": "4D3C10AF",
            "title": "nucleocapsid phosphoprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "ORF 9",
            "ORF9",
            "nucleocapsid",
            "nucleocapsid phosphoprotein",
            "open reading frame 9"
          ],
          "protein": {
            "accessionVersion": "YP_009724397.2",
            "range": [
              {
                "begin": "1",
                "end": "419"
              }
            ],
            "seqId": "YP_009724397.2:1-419",
            "sequenceHash": "9B7912B4",
            "title": "nucleocapsid phosphoprotein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "P0DTC9",
            "name": "Nucleoprotein"
          }
        }
      ],
      "geneId": 43740575,
      "name": "N"
    },
    {
      "cds": [
        {
          "name": "ORF10 protein",
          "nucleotide": {
            "accessionVersion": "NC_045512.2",
            "range": [
              {
                "begin": "29558",
                "end": "29674"
              }
            ],
            "seqId": "NC_045512.2:29558-29674",
            "sequenceHash": "761401EA",
            "title": "ORF10 protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "otherNames": [
            "ORF 10",
            "ORF10",
            "open reading frame 10"
          ],
          "protein": {
            "accessionVersion": "YP_009725255.1",
            "range": [
              {
                "begin": "1",
                "end": "38"
              }
            ],
            "seqId": "YP_009725255.1:1-38",
            "sequenceHash": "231201DA",
            "title": "ORF10 protein [organism=Severe acute respiratory syndrome coronavirus 2] [isolate=Wuhan-Hu-1]"
          },
          "uniProtKb": {
            "id": "A0A663DJA2",
            "name": "ORF10 protein"
          }
        }
      ],
      "geneId": 43740576,
      "name": "ORF10"
    }
  ],
  "isolateName": "Wuhan-Hu-1"
}

VirusAnnotationReport Structure

FieldTable Field MnemonicTable Column NameTypeDescriptionExamples
accessionaccessionAccessionstringNC_045512.2
isolateNameisolate-nameIsolate namestring
genes repeatedgene-GeneVirusGene

ConservedDomain Structure

FieldTable Field MnemonicTable Column NameTypeDescriptionExamples
accessionaccessionAccessionstringcdd accession
namenameNamestring
rangerange-RangeRangerange on the protein

Range Structure

A 1-based range on a sequence record.

FieldTable Field MnemonicTable Column NameTypeDescriptionExamples
beginstartStartuint64
endstopStopuint64
orientationorientationOrientationOrientation
orderorderOrderuint32
ribosomalSlippagecoming sooncoming soonint32When ribosomal slippage is desired, fill out slippage amount between this and previous range.

SeqRangeSetFasta Structure

FieldTable Field MnemonicTable Column NameTypeDescriptionExamples
seqIdseq-idSequence IDstringSeq_id may include location info in addition to a sequence accession
accessionVersionaccessionAccessionstringAccession and version of the viral nucleotide sequence
titletitleTitlestring
sequenceHashhashHashstringUnique identifier for identical sequences
range repeatedrange-RangeRangeSeries of intervals on above accession_version

VirusGene Structure

FieldTable Field MnemonicTable Column NameTypeDescriptionExamples
namenameNamestring
geneIdgene-idNCBI GeneIDuint32
nucleotidegenomic-GenomicSeqRangeSetFastaThe interval on the genomic nucleotide record of the CDS feature.
cds repeatedcds-CDSVirusPeptidepolyprotein or protein cds

VirusPeptide Structure

FieldTable Field MnemonicTable Column NameTypeDescriptionExamples
accessionaccessionAccessionstringProtein accession and version
namenameNamestringProtein name
otherNames repeatedother-namesOther NamesstringAlternate names for this protein
nucleotidenuc-fasta-Nucleotide FASTASeqRangeSetFastaThe interval on the genomic nucleotide record of this mature-peptide feature
proteinprotein-fasta-Protein FASTASeqRangeSetFastaThe full polyprotein record or interval on the polyprotein for mature-peptide features
pdbIds repeatedpdb-idsPDB IDsstringPDB identifiers for this protein
cdd repeatedcdd-CDDConservedDomainConserved Domains associated with this protein
uniProtKbuniprot-UniProtVirusPeptide.UniProtIdUniProt identifier
maturePeptide repeatedmat-peptide-Mature PeptideVirusPeptideEnzymatically processed products of a polyprotein
proteinCompletenessprot-completenessProtein CompletenessVirusPeptide.ViralPeptideCompletenessProtein completeness

VirusPeptide.UniProtId Structure

FieldTable Field MnemonicTable Column NameTypeDescriptionExamples
ididIDstringUniProt ID
namenameNamestringUniProt name

Orientation Enumeration

NameNumberDescription
none0
plus1
minus2

VirusPeptide.ViralPeptideCompleteness Enumeration

NameNumberDescription
UNKNOWN0
COMPLETE1
PARTIAL2

Scalar Value Types

Protocol buffers typeNotesC++PythonJavaGo
doubledoublefloatdoublefloat64
floatfloatfloatfloatfloat32
int32Uses variable-length encoding. Inefficient for encoding negative numbers – if your field is likely to have negative values, use sint32 instead.int32intintint32
int64Uses variable-length encoding. Inefficient for encoding negative numbers – if your field is likely to have negative values, use sint64 instead.int64int/longlongint64
uint32Uses variable-length encoding.uint32int/longintuint32
uint64Uses variable-length encoding.uint64int/longlonguint64
sint32Uses variable-length encoding. Signed int value. These more efficiently encode negative numbers than regular int32s.int32intintint32
sint64Uses variable-length encoding. Signed int value. These more efficiently encode negative numbers than regular int64s.int64int/longlongint64
fixed32Always four bytes. More efficient than uint32 if values are often greater than 2^28.uint32intintuint32
fixed64Always eight bytes. More efficient than uint64 if values are often greater than 2^56.uint64int/longlonguint64
sfixed32Always four bytes.int32intintint32
sfixed64Always eight bytes.int64int/longlongint64
boolboolbooleanbooleanbool
stringA string must always contain UTF-8 encoded or 7-bit ASCII text.stringstr/unicodeStringstring
bytesMay contain any arbitrary sequence of bytes.stringstrByteString[]byte
Generated November 25, 2024