Genome assembly 7738_4#60
- NCBI RefSeq assembly
- GCF_001352215.1
- Submitted GenBank assembly
- GCA_001352215.1
- Taxon
- Staphylococcus aureus
- Strain
- USFL341
- WGS project
- CFRG01
- Submitter
- SC
- Date
- Apr 1, 2015
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 2.9 Mb | 2.9 Mb |
Total ungapped length | 2.9 Mb | 2.9 Mb |
Number of scaffolds | 44 | 44 |
Scaffold N50 | 304.8 kb | 304.8 kb |
Scaffold L50 | 4 | 4 |
Number of contigs | 46 | 46 |
Contig N50 | 304.8 kb | 304.8 kb |
Contig L50 | 4 | 4 |
GC percent | 32.5 | 32.5 |
Genome coverage | 100.0x | 100.0x |
Assembly level | Scaffold | Scaffold |
Sample details
- BioSample ID
- SAMEA1324601
- Description
- Staphylococcus aureus; Staphylococcus aureus
- Submitter
- EBI
- ArrayExpress-Species
- Staphylococcus aureus
- ENA-CHECKLIST
- ERC000011
- ENA-FIRST-PUBLIC
- 2012-06-06T17:01:34Z
- ENA-LAST-UPDATE
- 2018-03-09T09:55:41Z
- External Id
- SAMEA1324601
- INSDC center name
- SC
- INSDC first public
- 2012-06-06T17:01:34Z
- INSDC last update
- 2018-03-09T09:55:41Z
- INSDC status
- public
- Submitter Id
- USFL341-sc-2012-11-08T15:47:09Z-1351134
- Collection date
- Mar 1, 2011
- Geographic location
- USA: New York, Inwood
- Host health state
- disease
- Isolation source
- soft tissue
- Sample name
- USFL341-sc-2012-11-08T15:47:09Z-1351134
- Scientific name
- Staphylococcus aureus
- Serovar
- ST8
- Host
- Homo sapiens
- Strain
- USFL341
- SRA
- ERS093105
- Models
- Generic
- Package
- Generic.1.0
- Submission date
- 2012-07-14T12:22:30.793
- Publication date
- 2012-06-06T00:00:00.000
- Last updated
- 2024-02-05T19:05:31.000
Additional genomes
Browse all Staphylococcus aureus genomes (102274)BioProject
PRJEB2870Staphylococcus aureus (USFL) study
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | SC |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) | Annotation submitted by SC |
Date | Nov 12, 2023 | Jul 23, 2015 |
Genes | 3,009 | 2,797 |
Protein-coding | 2,828 | 2,727 |
Software version | 6.6 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 97.91% (26th Percentile)
Contamination: 0.39%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Staphylococcus aureus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Staphylococcus aureus
- Submitted species name
- Staphylococcus aureus
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000330825.2 | GCA_000330825.2 |
Organism name | Staphylococcus aureus subsp. aureus DSM 20231 | Staphylococcus aureus |
Type category | type | type |
ANI | 99.9% | 99.9% |
Assembly coverage | 92.5% | 92.5% |
Type assembly coverage | 98.06% | 98.06% |
Chromosomes
Note: This scaffold-level genome assembly includes 44 scaffolds and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_001352215.1 | GCF_001352215.1 | 7738_4#60 | Scaffold | Apr 1, 2015 |