Genome assembly ASM301073v1
- NCBI RefSeq assembly
- GCF_003010735.1 (suppressed)
- Submitted GenBank assembly
- GCA_003010735.1
- Taxon
- Klebsiella pneumoniae subsp. ozaenae
- Strain
- AR_0096
- Submitter
- Centers for Disease Control and Prevention
- Date
- Mar 19, 2018
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- annotation fails completeness check
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.7 Mb | 5.7 Mb |
Total ungapped length | 5.7 Mb | 5.7 Mb |
Number of chromosomes | 6 | 6 |
Number of scaffolds | 6 | 6 |
Scaffold N50 | 5.1 Mb | 5.1 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 6 | 6 |
Contig N50 | 5.1 Mb | 5.1 Mb |
Contig L50 | 1 | 1 |
GC percent | 57 | 57 |
Genome coverage | 129.0x | 129.0x |
Assembly level | Complete Genome | Complete Genome |
View sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN04014937
- Description
- Pathogen: clinical or host-associated sample from Klebsiella pneumoniae subsp. ozaenae
- Submitter
- Centers for Disease Control and Prevention
- Panel id
- CarbaNP-65
- Strain
- AR_0096
- Sub species
- ozaenae
- Sample name
- FDA-CDC-AR_0096
- SRA
- SRS1613894
- Models
- Pathogen.cl
- Package
- Pathogen.cl.1.0
- Submission date
- 2015-08-27T16:16:18.000
- Publication date
- 2015-08-27T00:00:00.000
- Last updated
- 2024-10-17T10:04:05.207
Assembly methods
- Sequencing technology
- PacBio RSII
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- HGAP v. 2.3
Additional genomes
Browse all Klebsiella pneumoniae genomes (80212)BioProject
PRJNA292904Gram Negative Carbapenemase Detection Genome sequencing and assembly
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Nov 6, 2022 | Feb 28, 2018 |
Genes | 5,703 | 5,881 |
Protein-coding | 5,406 | 5,526 |
Software version | 6.3 | 4.4 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 94.35% (2nd Percentile)
Contamination: 2%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Klebsiella pneumoniae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- derived_species_match
- Submitted organism name
- Klebsiella pneumoniae subsp. ozaenae
- Submitted species name
- Klebsiella pneumoniae
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000788015.1 | GCA_000788015.1 |
Organism name | Klebsiella pneumoniae subsp. pneumoniae | Klebsiella pneumoniae |
Type category | type | type |
ANI | 99.27% | 99.27% |
Assembly coverage | 85.99% | 85.99% |
Type assembly coverage | 84.87% | 84.87% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | CP027612.1 | NZ_CP027612.1 | 5,065,840 | 57.5 | 0 | |
unnamed1 | CP027613.1 | NZ_CP027613.1 | 191,856 | 51.5 | 0 | |
unnamed2 | CP027614.1 | NZ_CP027614.1 | 100,759 | 56 | 0 | |
unnamed3 | CP027615.1 | NZ_CP027615.1 | 108,623 | 49.5 | 0 | |
unnamed4 | CP027616.1 | NZ_CP027616.1 | 129,985 | 54 | 0 | |
unnamed5 | CP027617.1 | NZ_CP027617.1 | 54,242 | 52 | 0 |
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_003010735.1 | GCF_003010735.1 | ASM301073v1 | Complete Genome | Mar 19, 2018 |