Genome assembly ASM301073v1

FTP
Actions
NCBI RefSeq assembly
GCF_003010735.1 (suppressed)
Submitted GenBank assembly
GCA_003010735.1
Taxon
Klebsiella pneumoniae subsp. ozaenae
Strain
AR_0096
Submitter
Centers for Disease Control and Prevention
Date
Mar 19, 2018

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • annotation fails completeness check

Assembly statistics

RefSeqGenBank
Genome size5.7 Mb5.7 Mb
Total ungapped length5.7 Mb5.7 Mb
Number of chromosomes66
Number of scaffolds66
Scaffold N505.1 Mb5.1 Mb
Scaffold L5011
Number of contigs66
Contig N505.1 Mb5.1 Mb
Contig L5011
GC percent5757
Genome coverage129.0x129.0x
Assembly levelComplete GenomeComplete Genome
View sequencesview GenBank sequences

Sample details

BioSample ID
SAMN04014937
Description
Pathogen: clinical or host-associated sample from Klebsiella pneumoniae subsp. ozaenae
Submitter
Centers for Disease Control and Prevention
Panel id
CarbaNP-65
Strain
AR_0096
Sub species
ozaenae
Sample name
FDA-CDC-AR_0096
SRA
SRS1613894
Models
Pathogen.cl
Package
Pathogen.cl.1.0
Submission date
2015-08-27T16:16:18.000
Publication date
2015-08-27T00:00:00.000
Last updated
2024-10-17T10:04:05.207

Assembly methods

Sequencing technology
PacBio RSII
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
HGAP v. 2.3

Additional genomes

Browse all Klebsiella pneumoniae genomes (80212)

BioProject

PRJNA292904

Gram Negative Carbapenemase Detection Genome sequencing and assembly

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateNov 6, 2022Feb 28, 2018
Genes5,7035,881
Protein-coding5,4065,526
Software version6.34.4

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.2)

Completeness: 94.35% (2nd Percentile)

Contamination: 2%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Klebsiella pneumoniae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
derived_species_match
Submitted organism name
Klebsiella pneumoniae subsp. ozaenae
Submitted species name
Klebsiella pneumoniae

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_000788015.1GCA_000788015.1
Organism nameKlebsiella pneumoniae subsp. pneumoniaeKlebsiella pneumoniae
Type categorytypetype
ANI99.27%99.27%
Assembly coverage85.99%85.99%
Type assembly coverage84.87%84.87%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeCP027612.1NZ_CP027612.15,065,84057.50
unnamed1CP027613.1NZ_CP027613.1191,85651.50
unnamed2CP027614.1NZ_CP027614.1100,759560
unnamed3CP027615.1NZ_CP027615.1108,62349.50
unnamed4CP027616.1NZ_CP027616.1129,985540
unnamed5CP027617.1NZ_CP027617.154,242520

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_003010735.1GCF_003010735.1ASM301073v1Complete GenomeMar 19, 2018