Genome assembly ASM333693v1
- NCBI RefSeq assembly
- GCF_003336935.1
- Submitted GenBank assembly
- GCA_003336935.1
- Taxon
- Shigella boydii
- Strain
- G1227
- WGS project
- LUFZ01
- Submitter
- Nankai University
- Date
- Jul 24, 2018
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 4.1 Mb | 4.1 Mb |
Total ungapped length | 4.1 Mb | 4.1 Mb |
Number of scaffolds | 548 | 548 |
Scaffold N50 | 17.5 kb | 17.5 kb |
Scaffold L50 | 72 | 72 |
Number of contigs | 551 | 551 |
Contig N50 | 17.2 kb | 17.2 kb |
Contig L50 | 73 | 73 |
GC percent | 51 | 51 |
Genome coverage | 100.0x | 100.0x |
Assembly level | Scaffold | Scaffold |
View sequences | view RefSeq sequences | view GenBank sequences |
Additional genomes
Browse all Shigella boydii genomes (863)BioProject
PRJNA314558Shigella boydii strain:G1227 Genome sequencing and assembly
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_003336935.1-RS_2024_05_04 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | May 4, 2024 | Mar 9, 2016 |
Genes | 4,402 | 4,397 |
Protein-coding | 3,670 | 3,772 |
Software version | 6.7 | 3.1 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingChromosomes
Note: This scaffold-level genome assembly includes 0 scaffolds and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_003336935.1 | GCF_003336935.1 | ASM333693v1 | Scaffold | Jul 24, 2018 |