Genome assembly ASM355554v1
reference

FTP
Actions
NCBI RefSeq assembly
GCF_003555545.1
Submitted GenBank assembly
GCA_003555545.1
Taxon
Paraflavitalea soli
Strain
5GH32-13
Relation to type material
assembly from type material
Submitter
National Institute of Agricultural Sciences
Date
Sep 13, 2018

Assembly statistics

RefSeqGenBank
Genome size8.4 Mb8.4 Mb
Total ungapped length8.4 Mb8.4 Mb
Number of chromosomes11
Number of scaffolds11
Scaffold N508.4 Mb8.4 Mb
Scaffold L5011
Number of contigs11
Contig N508.4 Mb8.4 Mb
Contig L5011
GC percent47.547.5
Genome coverage138.0x138.0x
Assembly levelComplete GenomeComplete Genome
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMN09981721
Description
Microbe sample from Paraflavitalea soli
Submitter
National Institute of Agricultural Sciences
Strain
5GH32-13
Isolation source
soil
Collection date
2005
Geographic location
South Korea: Yongin
Sample type
single cell
Collected by
Hang-Yeon Weon
Culture collection
KACC: 17331
Depth
Soil sediment
Identified by
Hang-Yeon Weon, Soon-Wo Kwon
Type-material
type material of Paraflavitalea soli
Sample name
Strain 5GH32-13
Models
Microbe, viral or environmental
Package
Microbe.1.0
Submission date
2018-09-05T20:01:03.650
Publication date
2018-09-05T00:00:00.000
Last updated
2020-01-15T21:03:08.838

Assembly methods

Sequencing technology
PacBio RSII
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
RS HGAP Assembly v. 3.0

Additional genomes

Browse all Paraflavitalea soli genomes (1)

BioProject

PRJNA489512

Paraflavitalea soli strain:5GH32-13 Genome sequencing

Publications

Showing 2 of 2

View in PubMed

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameGCF_003555545.1-RS_2024_10_23NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateOct 23, 2024Sep 7, 2018
Genes6,5016,541
Protein-coding6,4336,418
Software version6.84.6
View RefSeq annotationView GenBank annotation

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.3)

Completeness: 99.33% (100th Percentile)

Contamination: 2.26%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Chitinophagaceae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
below_threshold_mismatch
Submitted organism name
Paraflavitalea soli
Submitted species name
Paraflavitalea soli
Category
type
Comment
Assembly is the type_strain, mismatch is within genus and expected

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_032395985.1
Organism name

n/a

Paraflavitalea speifideaquila
Type category

n/a

type
ANI

n/a

83.12%
Assembly coverage

n/a

29.41%
Type assembly coverage

n/a

29.07%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeCP032157.1NZ_CP032157.18,443,18947.50

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_003555545.1GCF_003555545.1ASM355554v1Complete GenomeSep 13, 2018