Genome assembly ASM355554v1reference
- NCBI RefSeq assembly
- GCF_003555545.1
- Submitted GenBank assembly
- GCA_003555545.1
- Taxon
- Paraflavitalea soli
- Strain
- 5GH32-13
- Relation to type material
- assembly from type material
- Submitter
- National Institute of Agricultural Sciences
- Date
- Sep 13, 2018
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 8.4 Mb | 8.4 Mb |
Total ungapped length | 8.4 Mb | 8.4 Mb |
Number of chromosomes | 1 | 1 |
Number of scaffolds | 1 | 1 |
Scaffold N50 | 8.4 Mb | 8.4 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 1 | 1 |
Contig N50 | 8.4 Mb | 8.4 Mb |
Contig L50 | 1 | 1 |
GC percent | 47.5 | 47.5 |
Genome coverage | 138.0x | 138.0x |
Assembly level | Complete Genome | Complete Genome |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN09981721
- Description
- Microbe sample from Paraflavitalea soli
- Submitter
- National Institute of Agricultural Sciences
- Strain
- 5GH32-13
- Isolation source
- soil
- Collection date
- 2005
- Geographic location
- South Korea: Yongin
- Sample type
- single cell
- Collected by
- Hang-Yeon Weon
- Culture collection
- KACC: 17331
- Depth
- Soil sediment
- Identified by
- Hang-Yeon Weon, Soon-Wo Kwon
- Type-material
- type material of Paraflavitalea soli
- Sample name
- Strain 5GH32-13
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2018-09-05T20:01:03.650
- Publication date
- 2018-09-05T00:00:00.000
- Last updated
- 2020-01-15T21:03:08.838
Assembly methods
- Sequencing technology
- PacBio RSII
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- RS HGAP Assembly v. 3.0
Additional genomes
Browse all Paraflavitalea soli genomes (1)BioProject
PRJNA489512Paraflavitalea soli strain:5GH32-13 Genome sequencing
Publications
M Thai, et al.
RefSeq microbial genomes database: new representation and annotation strategy
T Tatusova, et al.
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_003555545.1-RS_2024_10_23 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Oct 23, 2024 | Sep 7, 2018 |
Genes | 6,501 | 6,541 |
Protein-coding | 6,433 | 6,418 |
Software version | 6.8 | 4.6 |
View RefSeq annotation | View GenBank annotation |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 99.33% (100th Percentile)
Contamination: 2.26%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Chitinophagaceae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- below_threshold_mismatch
- Submitted organism name
- Paraflavitalea soli
- Submitted species name
- Paraflavitalea soli
- Category
- type
- Comment
- Assembly is the type_strain, mismatch is within genus and expected
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_032395985.1 |
Organism name | n/a | Paraflavitalea speifideaquila |
Type category | n/a | type |
ANI | n/a | 83.12% |
Assembly coverage | n/a | 29.41% |
Type assembly coverage | n/a | 29.07% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | CP032157.1 | NZ_CP032157.1 | 8,443,189 | 47.5 | 0 |
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_003555545.1 | GCF_003555545.1 | ASM355554v1 | Complete Genome | Sep 13, 2018 |