Genome assembly ASM1850236v1

Actions
NCBI RefSeq assembly
GCF_018502365.1
Submitted GenBank assembly
GCA_018502365.1
Taxon
Staphylococcus aureus
Strain
Colony583
Submitter
Ministry of Public Health-Thailand
Date
May 26, 2021

Assembly statistics

RefSeqGenBank
Genome size2.8 Mb2.8 Mb
Total ungapped length2.5 Mb2.5 Mb
Number of chromosomes11
Number of scaffolds11
Scaffold N502.8 Mb2.8 Mb
Scaffold L5011
Number of contigs366366
Contig N5024.6 kb24.6 kb
Contig L503333
GC percent3333
Genome coverage91.4x91.4x
Assembly levelChromosomeChromosome

Sample details

BioSample ID
SAMN17905373
Description
Pathogen: environmental/food/other sample from Staphylococcus aureus
Submitter
Ministry of Public Health-Thailand
Strain
Colony583
Collected by
Department of Disease Control, Ministry of Public Health
Collection date
Not collected
Geographic location
Thailand
Latitude and longitude
Not applicable
Isolation source
food
Sample name
Colony583
Models
Pathogen.env
Package
Pathogen.env.1.0
Submission date
2021-02-13T01:16:07.623
Publication date
2021-02-13T00:00:00.000
Last updated
2021-07-12T07:09:24.345

Assembly methods

Sequencing technology
Illumina HiSeq
Assembly method
idba_ud v. V1.1.3

Additional genomes

Browse all Staphylococcus aureus genomes (102274)

BioProject

PRJNA668870

Whole genome Sequencing for food-borne outbreaks in Thailand

Pathogen Detection Resource

Annotation details

RefSeq
ProviderNCBI RefSeq
NameGCF_018502365.1-RS_2024_06_22
DateJun 22, 2024
Genes2,615
Protein-coding2,387
Software version6.7

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.2)

Completeness: 97.74% (18th Percentile)

Contamination: 1.63%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Staphylococcus aureus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Staphylococcus aureus
Submitted species name
Staphylococcus aureus

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_022869625.1GCA_022869625.1
Organism nameStaphylococcus aureusStaphylococcus aureus
Type categorytypetype
ANI99.04%99.04%
Assembly coverage97.38%97.38%
Type assembly coverage89.16%89.16%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeCP075509.1NZ_CP075509.12,784,749330

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_018502365.1GCF_018502365.1ASM1850236v1ChromosomeMay 26, 2021