Genome assembly ASM1850236v1
- NCBI RefSeq assembly
- GCF_018502365.1
- Submitted GenBank assembly
- GCA_018502365.1
- Taxon
- Staphylococcus aureus
- Strain
- Colony583
- Submitter
- Ministry of Public Health-Thailand
- Date
- May 26, 2021
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 2.8 Mb | 2.8 Mb |
Total ungapped length | 2.5 Mb | 2.5 Mb |
Number of chromosomes | 1 | 1 |
Number of scaffolds | 1 | 1 |
Scaffold N50 | 2.8 Mb | 2.8 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 366 | 366 |
Contig N50 | 24.6 kb | 24.6 kb |
Contig L50 | 33 | 33 |
GC percent | 33 | 33 |
Genome coverage | 91.4x | 91.4x |
Assembly level | Chromosome | Chromosome |
Sample details
- BioSample ID
- SAMN17905373
- Description
- Pathogen: environmental/food/other sample from Staphylococcus aureus
- Submitter
- Ministry of Public Health-Thailand
- Strain
- Colony583
- Collected by
- Department of Disease Control, Ministry of Public Health
- Collection date
- Not collected
- Geographic location
- Thailand
- Latitude and longitude
- Not applicable
- Isolation source
- food
- Sample name
- Colony583
- Models
- Pathogen.env
- Package
- Pathogen.env.1.0
- Submission date
- 2021-02-13T01:16:07.623
- Publication date
- 2021-02-13T00:00:00.000
- Last updated
- 2021-07-12T07:09:24.345
Assembly methods
- Sequencing technology
- Illumina HiSeq
- Assembly method
- idba_ud v. V1.1.3
Additional genomes
Browse all Staphylococcus aureus genomes (102274)BioProject
PRJNA668870Whole genome Sequencing for food-borne outbreaks in Thailand
Pathogen Detection Resource
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_018502365.1-RS_2024_06_22 |
Date | Jun 22, 2024 |
Genes | 2,615 |
Protein-coding | 2,387 |
Software version | 6.7 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 97.74% (18th Percentile)
Contamination: 1.63%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Staphylococcus aureus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Staphylococcus aureus
- Submitted species name
- Staphylococcus aureus
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_022869625.1 | GCA_022869625.1 |
Organism name | Staphylococcus aureus | Staphylococcus aureus |
Type category | type | type |
ANI | 99.04% | 99.04% |
Assembly coverage | 97.38% | 97.38% |
Type assembly coverage | 89.16% | 89.16% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | CP075509.1 | NZ_CP075509.1 | 2,784,749 | 33 | 0 |
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_018502365.1 | GCF_018502365.1 | ASM1850236v1 | Chromosome | May 26, 2021 |