Genome assembly ASM1926506v1
- NCBI RefSeq assembly
- GCF_019265065.1
- Submitted GenBank assembly
- GCA_019265065.1
- Taxon
- Enterobacter cloacae
- Strain
- Colony416
- Submitter
- Ministry of Public Health-Thailand
- Date
- Jul 18, 2021
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5 Mb | 5 Mb |
Total ungapped length | 4.5 Mb | 4.5 Mb |
Number of chromosomes | 1 | 1 |
Number of scaffolds | 1 | 1 |
Scaffold N50 | 5 Mb | 5 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 311 | 311 |
Contig N50 | 64.6 kb | 64.6 kb |
Contig L50 | 21 | 21 |
GC percent | 55.5 | 55.5 |
Genome coverage | 88.4x | 88.4x |
Assembly level | Chromosome | Chromosome |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN17833498
- Description
- Pathogen: environmental/food/other sample from Enterobacter cloacae
- Submitter
- Ministry of Public Health-Thailand
- Strain
- Colony416
- Collected by
- Department of Disease Control, Ministry of Public Health
- Collection date
- Not collected
- Geographic location
- Thailand: Nakhon Ratchasima
- Latitude and longitude
- Not applicable
- Isolation source
- food
- Sample name
- Colony416
- Models
- Pathogen.env
- Package
- Pathogen.env.1.0
- Submission date
- 2021-02-08T10:55:08.143
- Publication date
- 2021-02-08T00:00:00.000
- Last updated
- 2021-07-12T07:09:23.007
Assembly methods
- Sequencing technology
- Illumina HiSeq
- Assembly method
- idba_ud v. V1.1.3
Additional genomes
Browse all Enterobacter cloacae genomes (1285)BioProject
PRJNA668870Whole genome Sequencing for food-borne outbreaks in Thailand
Pathogen Detection Resource
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_019265065.1-RS_2024_08_18 |
Date | Aug 18, 2024 |
Genes | 4,272 |
Protein-coding | 4,080 |
Software version | 6.8 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 95.87% (29th Percentile, dark blue bar)
Contamination: 0.34%
Completeness of Enterobacter cloacae RefSeq assemblies
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter cloacae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Enterobacter cloacae
- Submitted species name
- Enterobacter cloacae
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_021469225.1 | GCA_021469225.1 |
Organism name | Enterobacter cloacae | Enterobacter cloacae |
Type category | type | type |
ANI | 99% | 99% |
Assembly coverage | 96.55% | 96.55% |
Type assembly coverage | 76.7% | 76.7% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | CP078536.1 | NZ_CP078536.1 | 5,033,927 | 55.5 | 0 |
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_019265065.1 | GCF_019265065.1 | ASM1926506v1 | Chromosome | Jul 18, 2021 |