Genome assembly ASM1926506v1

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NCBI RefSeq assembly
GCF_019265065.1
Submitted GenBank assembly
GCA_019265065.1
Taxon
Enterobacter cloacae
Strain
Colony416
Submitter
Ministry of Public Health-Thailand
Date
Jul 18, 2021

Assembly statistics

RefSeqGenBank
Genome size5 Mb5 Mb
Total ungapped length4.5 Mb4.5 Mb
Number of chromosomes11
Number of scaffolds11
Scaffold N505 Mb5 Mb
Scaffold L5011
Number of contigs311311
Contig N5064.6 kb64.6 kb
Contig L502121
GC percent55.555.5
Genome coverage88.4x88.4x
Assembly levelChromosomeChromosome
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMN17833498
Description
Pathogen: environmental/food/other sample from Enterobacter cloacae
Submitter
Ministry of Public Health-Thailand
Strain
Colony416
Collected by
Department of Disease Control, Ministry of Public Health
Collection date
Not collected
Geographic location
Thailand: Nakhon Ratchasima
Latitude and longitude
Not applicable
Isolation source
food
Sample name
Colony416
Models
Pathogen.env
Package
Pathogen.env.1.0
Submission date
2021-02-08T10:55:08.143
Publication date
2021-02-08T00:00:00.000
Last updated
2021-07-12T07:09:23.007

Assembly methods

Sequencing technology
Illumina HiSeq
Assembly method
idba_ud v. V1.1.3

Additional genomes

Browse all Enterobacter cloacae genomes (1285)

BioProject

PRJNA668870

Whole genome Sequencing for food-borne outbreaks in Thailand

Pathogen Detection Resource

Annotation details

RefSeq
ProviderNCBI RefSeq
NameGCF_019265065.1-RS_2024_08_18
DateAug 18, 2024
Genes4,272
Protein-coding4,080
Software version6.8

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.3)

Completeness: 95.87% (29th Percentile, dark blue bar)

Contamination: 0.34%

Completeness of Enterobacter cloacae RefSeq assemblies

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter cloacae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Enterobacter cloacae
Submitted species name
Enterobacter cloacae

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_021469225.1GCA_021469225.1
Organism nameEnterobacter cloacaeEnterobacter cloacae
Type categorytypetype
ANI99%99%
Assembly coverage96.55%96.55%
Type assembly coverage76.7%76.7%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeCP078536.1NZ_CP078536.15,033,92755.50

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_019265065.1GCF_019265065.1ASM1926506v1ChromosomeJul 18, 2021