Genome assembly ASM2234798v1
- NCBI RefSeq assembly
- GCF_022347985.1
- Submitted GenBank assembly
- GCA_022347985.1
- Taxon
- Photobacterium sp. OFAV2-7
- Strain
- OFAV2-7
- WGS project
- JAKRFQ01
- Submitter
- Meyer Microbes Lab
- Date
- Feb 20, 2022
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 4.9 Mb | 4.9 Mb |
Total ungapped length | 4.9 Mb | 4.9 Mb |
Number of contigs | 781 | 781 |
Contig N50 | 7 kb | 7 kb |
Contig L50 | 188 | 188 |
GC percent | 48.5 | 48.5 |
Genome coverage | 7.0x | 7.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN25860350
- Description
- MIGS Cultured Bacterial/Archaeal sample from Photobacterium sp. OFAV2-7
- Comment
- Keywords: GSC:MIxS;MIGS:6.0
- Submitter
- Meyer Microbes Lab
- Strain
- OFAV2-7
- Collection date
- Jan 28, 2020
- Broad-scale environmental context
- marine coral reef biome [ENVO:01000049]
- Local-scale environmental context
- offshore reef
- Environmental medium
- surface mucus layer and tissue
- Geographic location
- USA: FL, Dry Tortugas
- Host
- Orbicella faveolata
- Isolation and growth condition
- seawater medium
- Latitude and longitude
- 24.56 N 81.80 W
- Number of replicons
- not collected
- Reference for biomaterial
- unpublished
- Isolation source
- coral surface mucus layer and tissue
- Sample name
- OFAV2-7
- Models
- MIGS.ba, MIGS/MIMS/MIMARKS.host-associated
- Package
- MIGS.ba.host-associated.6.0
- Submission date
- 2022-02-11T10:59:04.956
- Publication date
- 2022-02-11T00:00:00.000
- Last updated
- 2022-02-14T06:40:04.514
Assembly methods
- Sequencing technology
- Illumina MiSeq
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. 3.15.3
Additional genomes
Browse all Photobacterium sp. OFAV2-7 genomes (1)BioProject
PRJNA795563Genome sequencing and assembly of coral-associated bacteria
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_022347985.1-RS_2024_08_18 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Aug 18, 2024 | Feb 15, 2022 |
Genes | 4,922 | 4,896 |
Protein-coding | 4,637 | 4,790 |
Software version | 6.8 | 6.0 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 77.37% (100th Percentile)
Contamination: 5.05%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Photobacterium CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- genus_match
- Submitted organism name
- Photobacterium sp. OFAV2_7
- Submitted species name
- Photobacterium sp. OFAV2_7
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_001939735.1 |
Organism name | n/a | Photobacterium proteolyticum |
Type category | n/a | type |
ANI | n/a | 93% |
Assembly coverage | n/a | 76.26% |
Type assembly coverage | n/a | 58.14% |
Chromosomes
Note: This contig-level genome assembly includes 781 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_022347985.1 | GCF_022347985.1 | ASM2234798v1 | Contig | Feb 20, 2022 |