Genome assembly ASM3439899v1

FTP
Actions
NCBI RefSeq assembly
GCF_034398995.1
Submitted GenBank assembly
GCA_034398995.1
Taxon
Bacillus cereus
Strain
BY9-4LC
WGS project
JAPJLU01
Submitter
South China Agricultural University
Date
Dec 14, 2023

Assembly statistics

RefSeqGenBank
Genome size5.7 Mb5.7 Mb
Total ungapped length5.7 Mb5.7 Mb
Number of scaffolds3434
Scaffold N50567.7 kb567.7 kb
Scaffold L5044
Number of contigs4646
Contig N50412.1 kb412.1 kb
Contig L5055
GC percent3535
Genome coverage100.0x100.0x
Assembly levelScaffoldScaffold
View sequencesview RefSeq sequences

Sample details

BioSample ID
SAMN31710667
Description
Microbe sample from Bacillus cereus
Submitter
South China Agricultural University
Isolation source
Chinese sausage
Collection date
2021-12
Geographic location
China:Guangzhou
Sample type
pure culture
Strain
BY9-4LC
Sample name
BY9-4LC
Models
Microbe, viral or environmental
Package
Microbe.1.0
Submission date
2022-11-14T07:25:03.763
Publication date
2023-11-14T00:50:33.257
Last updated
2023-11-14T00:50:33.257

Assembly methods

Sequencing technology
Illumina MiSeq
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
CLC NGS Cell v. 10.0.1

Additional genomes

Browse all Bacillus cereus genomes (2875)

BioProject

PRJNA901291

Bacillus cereus strain:BY10-3LC Genome sequencing and assembly

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqNCBI
NameGCF_034398995.1-RS_2024_12_19NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateDec 19, 2024Nov 15, 2022
Genes5,8095,796
Protein-coding5,5205,533
Software version6.96.3

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.3)

Completeness: 98.9% (58th Percentile)

Contamination: 0.4%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Bacillus cereus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
species_match
Submitted organism name
Bacillus cereus
Submitted species name
Bacillus cereus

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_045287585.1GCA_045287585.1
Organism nameBacillus cereus ATCC 14579Bacillus cereus
Type categorytypetype
ANI97.15%97.15%
Assembly coverage84.01%84.01%
Type assembly coverage87.55%87.55%

Chromosomes

Note: This scaffold-level genome assembly includes 34 scaffolds and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_034398995.1GCF_034398995.1ASM3439899v1ScaffoldDec 14, 2023