Genome assembly ASM3439899v1
- NCBI RefSeq assembly
- GCF_034398995.1
- Submitted GenBank assembly
- GCA_034398995.1
- Taxon
- Bacillus cereus
- Strain
- BY9-4LC
- WGS project
- JAPJLU01
- Submitter
- South China Agricultural University
- Date
- Dec 14, 2023
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.7 Mb | 5.7 Mb |
Total ungapped length | 5.7 Mb | 5.7 Mb |
Number of scaffolds | 34 | 34 |
Scaffold N50 | 567.7 kb | 567.7 kb |
Scaffold L50 | 4 | 4 |
Number of contigs | 46 | 46 |
Contig N50 | 412.1 kb | 412.1 kb |
Contig L50 | 5 | 5 |
GC percent | 35 | 35 |
Genome coverage | 100.0x | 100.0x |
Assembly level | Scaffold | Scaffold |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN31710667
- Description
- Microbe sample from Bacillus cereus
- Submitter
- South China Agricultural University
- Isolation source
- Chinese sausage
- Collection date
- 2021-12
- Geographic location
- China:Guangzhou
- Sample type
- pure culture
- Strain
- BY9-4LC
- Sample name
- BY9-4LC
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2022-11-14T07:25:03.763
- Publication date
- 2023-11-14T00:50:33.257
- Last updated
- 2023-11-14T00:50:33.257
Assembly methods
- Sequencing technology
- Illumina MiSeq
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- CLC NGS Cell v. 10.0.1
Additional genomes
Browse all Bacillus cereus genomes (2875)BioProject
PRJNA901291Bacillus cereus strain:BY10-3LC Genome sequencing and assembly
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_034398995.1-RS_2024_12_19 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Dec 19, 2024 | Nov 15, 2022 |
Genes | 5,809 | 5,796 |
Protein-coding | 5,520 | 5,533 |
Software version | 6.9 | 6.3 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 98.9% (58th Percentile)
Contamination: 0.4%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Bacillus cereus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Bacillus cereus
- Submitted species name
- Bacillus cereus
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_045287585.1 | GCA_045287585.1 |
Organism name | Bacillus cereus ATCC 14579 | Bacillus cereus |
Type category | type | type |
ANI | 97.15% | 97.15% |
Assembly coverage | 84.01% | 84.01% |
Type assembly coverage | 87.55% | 87.55% |
Chromosomes
Note: This scaffold-level genome assembly includes 34 scaffolds and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_034398995.1 | GCF_034398995.1 | ASM3439899v1 | Scaffold | Dec 14, 2023 |