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Genome assembly ASM3974767v1

FTP
Actions
Submitted GenBank assembly
GCA_039747675.1
Taxon
Miltoncostaeaceae bacterium
Isolate
SLM_MC1B_68-L14
WGS project
JBCJMK01
Submitter
Korea Polar Research Institute, Republic of Korea
Date
May 21, 2024

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from single cell
  • from large multi-isolate project
  • genus undefined

Assembly statistics

GenBank
Genome size881.2 kb
Total ungapped length881.2 kb
Number of contigs74
Contig N5018 kb
Contig L5014
GC percent67
Genome coverage60.4x
Assembly levelContig

Sample details

BioSample ID
SAMN40273894
Description
MISAG Single Amplified Genome sample from Miltoncostaeaceae bacterium
Comment
Keywords: GSC:MIxS;MISAG:6.0
Submitter
Korea Polar Research Institute, Republic of Korea
Isolate
SLM_MC1B_68-L14
Isolation source
single cell amplified by WGA-X; Sediment (6~8 cm), Mercer Subglacial Lake
Collection date
2018-12
Geographic location
Antarctica: Mercer Subglcial lake
Latitude and longitude
84.64029 S 149.50134 W
Reference for biomaterial
Genomic and evolutionary features of microbial lineages inhabiting a West Antarctic subglacial lake ecosystem
Sample collection device or method
Sediment Core
Sample name
SLM_MC1B_68-L14
Models
MISAG
Package
MISAG.6.0
Submission date
2024-03-06T00:37:07.960
Publication date
2024-03-11T00:00:00.000
Last updated
2024-03-13T08:14:54.437

Assembly methods

Sequencing technology
Illumina HiSeq
Assembly method
SPAdes v. v3.13.0

Additional genomes

Browse all Miltoncostaeaceae bacterium genomes (147)

BioProject

PRJNA1084198

High-throughput single-cell genome analysis of microbiomes in Mercer subglacial lake, Antarctica

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Miltoncostaeaceae bacterium
Submitted species name
Miltoncostaeaceae bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_900103985.1
Organism name

n/a

Actinacidiphila guanduensis
Type category

n/a

type
ANI

n/a

85.78%
Assembly coverage

n/a

0.05%
Type assembly coverage

n/a

n/a

Chromosomes

Note: This contig-level genome assembly includes 74 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_039747675.1

n/a

ASM3974767v1ContigMay 21, 2024