Genome assembly ASM3974767v1
- Submitted GenBank assembly
- GCA_039747675.1
- Taxon
- Miltoncostaeaceae bacterium
- Isolate
- SLM_MC1B_68-L14
- WGS project
- JBCJMK01
- Submitter
- Korea Polar Research Institute, Republic of Korea
- Date
- May 21, 2024
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from single cell
- from large multi-isolate project
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 881.2 kb |
Total ungapped length | 881.2 kb |
Number of contigs | 74 |
Contig N50 | 18 kb |
Contig L50 | 14 |
GC percent | 67 |
Genome coverage | 60.4x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN40273894
- Description
- MISAG Single Amplified Genome sample from Miltoncostaeaceae bacterium
- Comment
- Keywords: GSC:MIxS;MISAG:6.0
- Submitter
- Korea Polar Research Institute, Republic of Korea
- Isolate
- SLM_MC1B_68-L14
- Isolation source
- single cell amplified by WGA-X; Sediment (6~8 cm), Mercer Subglacial Lake
- Collection date
- 2018-12
- Geographic location
- Antarctica: Mercer Subglcial lake
- Latitude and longitude
- 84.64029 S 149.50134 W
- Reference for biomaterial
- Genomic and evolutionary features of microbial lineages inhabiting a West Antarctic subglacial lake ecosystem
- Sample collection device or method
- Sediment Core
- Sample name
- SLM_MC1B_68-L14
- Models
- MISAG
- Package
- MISAG.6.0
- Submission date
- 2024-03-06T00:37:07.960
- Publication date
- 2024-03-11T00:00:00.000
- Last updated
- 2024-03-13T08:14:54.437
Assembly methods
- Sequencing technology
- Illumina HiSeq
- Assembly method
- SPAdes v. v3.13.0
Additional genomes
Browse all Miltoncostaeaceae bacterium genomes (147)BioProject
PRJNA1084198High-throughput single-cell genome analysis of microbiomes in Mercer subglacial lake, Antarctica
Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Miltoncostaeaceae bacterium
- Submitted species name
- Miltoncostaeaceae bacterium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_900103985.1 |
Organism name | n/a | Actinacidiphila guanduensis |
Type category | n/a | type |
ANI | n/a | 85.78% |
Assembly coverage | n/a | 0.05% |
Type assembly coverage | n/a | n/a |
Chromosomes
Note: This contig-level genome assembly includes 74 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_039747675.1 | n/a | ASM3974767v1 | Contig | May 21, 2024 |