Genome assembly ASM4175169v1
- Submitted GenBank assembly
- GCA_041739755.1
- Taxon
- Gemmobacter sp.
- Isolate
- JTS-AC25
- WGS project
- JBGSNF01
- Submitter
- Rutgers University
- Date
- Sep 4, 2024
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
- fragmented assembly
Assembly statistics
GenBank | |
---|---|
Genome size | 2.2 Mb |
Total ungapped length | 2.2 Mb |
Number of contigs | 537 |
Contig N50 | 5 kb |
Contig L50 | 142 |
GC percent | 62.5 |
Genome coverage | 50.0x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN41306533
- Description
- MIMAG Metagenome-assembled Genome sample from Gemmobacter sp.
- Comment
- Keywords: GSC:MIxS;MIMAG:6.0
- Submitter
- Rutgers University
- Isolation source
- biofilm from active travertine-forming spring
- Collection date
- 2011-08
- Geographic location
- Norway: Svalbard, Jotun geothermal spring
- Latitude and longitude
- 79.5488889 N 13.351944 E
- Isolate
- JTS-AC25
- Depth
- 0
- Elevation
- 500 m
- Broad-scale environmental context
- geothermal spring biome
- Local-scale environmental context
- active spring
- Environmental medium
- geothermal water
- Miscellaneous parameter
- Ac.bin.25_MAG
- Metagenomic
- 1
- Environmental-sample
- 1
- Sample type
- metagenomic assembly
- Metagenome source
- hot springs metagenome
- Derived from
- SAMN40196793 ,SAMN40196794,SAMN40196795,SAMN40196796,SAMN40196797,SAMN40196798,SAMN40196799
- Sample name
- Ac.bin.25
- Models
- MIMAG.microbial
- Package
- MIMAG.microbial.6.0
- Submission date
- 2024-05-09T21:13:08.030
- Publication date
- 2024-07-18T00:00:00.000
- Last updated
- 2024-08-29T11:23:45.484
Assembly methods
- Sequencing technology
- Illumina NovaSeq
- Assembly method
- MEGAHIT v. 1.2.9
Additional genomes
Browse all Burkholderiaceae bacterium genomes (1)BioProject
PRJNA1080596Microbial ecology of an arctic travertine geothermal spring
Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Gemmobacter sp.
- Submitted species name
- Gemmobacter sp.
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_009380135.2 |
Organism name | n/a | Fertoeibacter niger |
Type category | n/a | type |
ANI | n/a | 80.6% |
Assembly coverage | n/a | 13.42% |
Type assembly coverage | n/a | 6.92% |
Chromosomes
Note: This contig-level genome assembly includes 537 contigs and no assembled chromosomes.