Genome assembly ASM4175169v1

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Submitted GenBank assembly
GCA_041739755.1
Taxon
Gemmobacter sp.
Isolate
JTS-AC25
WGS project
JBGSNF01
Submitter
Rutgers University
Date
Sep 4, 2024

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • fragmented assembly

Assembly statistics

GenBank
Genome size2.2 Mb
Total ungapped length2.2 Mb
Number of contigs537
Contig N505 kb
Contig L50142
GC percent62.5
Genome coverage50.0x
Assembly levelContig

Sample details

BioSample ID
SAMN41306533
Description
MIMAG Metagenome-assembled Genome sample from Gemmobacter sp.
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
Rutgers University
Isolation source
biofilm from active travertine-forming spring
Collection date
2011-08
Geographic location
Norway: Svalbard, Jotun geothermal spring
Latitude and longitude
79.5488889 N 13.351944 E
Isolate
JTS-AC25
Depth
0
Elevation
500 m
Broad-scale environmental context
geothermal spring biome
Local-scale environmental context
active spring
Environmental medium
geothermal water
Miscellaneous parameter
Ac.bin.25_MAG
Metagenomic
1
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
hot springs metagenome
Derived from
SAMN40196793 ,SAMN40196794,SAMN40196795,SAMN40196796,SAMN40196797,SAMN40196798,SAMN40196799
Sample name
Ac.bin.25
Models
MIMAG.microbial
Package
MIMAG.microbial.6.0
Submission date
2024-05-09T21:13:08.030
Publication date
2024-07-18T00:00:00.000
Last updated
2024-08-29T11:23:45.484

Assembly methods

Sequencing technology
Illumina NovaSeq
Assembly method
MEGAHIT v. 1.2.9

Additional genomes

Browse all Burkholderiaceae bacterium genomes (1)

BioProject

PRJNA1080596

Microbial ecology of an arctic travertine geothermal spring

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Gemmobacter sp.
Submitted species name
Gemmobacter sp.

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_009380135.2
Organism name

n/a

Fertoeibacter niger
Type category

n/a

type
ANI

n/a

80.6%
Assembly coverage

n/a

13.42%
Type assembly coverage

n/a

6.92%

Chromosomes

Note: This contig-level genome assembly includes 537 contigs and no assembled chromosomes.