Genome assembly 25964_2#28
- NCBI RefSeq assembly
- GCF_902166485.1
- Submitted GenBank assembly
- GCA_902166485.1
- Taxon
- Enterobacter hormaechei (CDC Enteric Group 75)
- Strain
- 4928STDY7071152
- Submitter
- SC
- Date
- Jul 9, 2019
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5 Mb | 5 Mb |
Total ungapped length | 4.9 Mb | 4.9 Mb |
Number of chromosomes | 1 | 1 |
Number of scaffolds | 1 | 1 |
Scaffold N50 | 5 Mb | 5 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 14 | 14 |
Contig N50 | 941 kb | 941 kb |
Contig L50 | 2 | 2 |
GC percent | 55.5 | 55.5 |
Genome coverage | 45.0x | 45.0x |
Assembly level | Chromosome | Chromosome |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMEA104567276
- Description
- A01676_4_2
- Submitter
- EBI
- ENA-CHECKLIST
- ERC000011
- ENA-FIRST-PUBLIC
- 2019-06-28T11:02:55Z
- ENA-LAST-UPDATE
- 2020-04-20T14:34:38Z
- External Id
- SAMEA104567276
- INSDC center name
- SC
- INSDC first public
- 2019-06-28T11:02:55Z
- INSDC last update
- 2020-04-20T14:34:38Z
- INSDC status
- public
- Submitter Id
- 06728494-8749-11e7-a4ed-3c4a9275d6c8
- Anonymized name
- 3290427
- Collection date
- 2018
- Common name
- Enterobacter cloacae
- Geographic location
- United Kingdom
- Host health state
- carriage
- Isolation source
- faecal
- Sample name
- 06728494-8749-11e7-a4ed-3c4a9275d6c8
- Scientific name
- Enterobacter hormaechei
- Host
- Homo sapiens
- Strain
- 4928STDY7071152
- Supplier name
- A01676_4_2
- SRA
- ERS2178560
- Models
- Generic
- Package
- Generic.1.0
- Submission date
- 2019-06-29T08:07:40.983
- Publication date
- 2019-06-28T00:00:00.000
- Last updated
- 2024-02-07T00:00:03.000
Assembly methods
- Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from 'Enterobacter cloacae' to 'Enterobacter hormaechei' in April 2020.
Additional genomes
Browse all Enterobacter hormaechei genomes (8942)BioProject
PRJEB22252Baby_Biome_Study_gastrointestinal_bacterial_genomes
Pathogen Detection Resource
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_902166485.1-RS_2024_04_02 |
Date | Apr 2, 2024 |
Genes | 4,768 |
Protein-coding | 4,608 |
Software version | 6.7 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 99.45% (69th Percentile)
Contamination: 1.29%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- derived_species_match
- Submitted organism name
- Enterobacter hormaechei
- Submitted species name
- Enterobacter hormaechei
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_001729725.1 | GCA_001729725.1 |
Organism name | Enterobacter hormaechei subsp. steigerwaltii | Enterobacter hormaechei |
Type category | type | type |
ANI | 99% | 99% |
Assembly coverage | 89.93% | 89.93% |
Type assembly coverage | 92.59% | 92.59% |
Chromosomes
Chromosome | GenBank | RefSeq | Size (bp) | GC content (%) | Unlocalized count | Action |
---|---|---|---|---|---|---|
chromosome | LR607340.1 | NZ_LR607340.1 | 4,975,856 | 55.5 | 0 |
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_902166485.1 | GCF_902166485.1 | 25964_2#28 | Chromosome | Jul 9, 2019 |