Genome assembly 25964_2#28

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NCBI RefSeq assembly
GCF_902166485.1
Submitted GenBank assembly
GCA_902166485.1
Taxon
Enterobacter hormaechei (CDC Enteric Group 75)
Strain
4928STDY7071152
Submitter
SC
Date
Jul 9, 2019

Assembly statistics

RefSeqGenBank
Genome size5 Mb5 Mb
Total ungapped length4.9 Mb4.9 Mb
Number of chromosomes11
Number of scaffolds11
Scaffold N505 Mb5 Mb
Scaffold L5011
Number of contigs1414
Contig N50941 kb941 kb
Contig L5022
GC percent55.555.5
Genome coverage45.0x45.0x
Assembly levelChromosomeChromosome
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMEA104567276
Description
A01676_4_2
Submitter
EBI
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2019-06-28T11:02:55Z
ENA-LAST-UPDATE
2020-04-20T14:34:38Z
External Id
SAMEA104567276
INSDC center name
SC
INSDC first public
2019-06-28T11:02:55Z
INSDC last update
2020-04-20T14:34:38Z
INSDC status
public
Submitter Id
06728494-8749-11e7-a4ed-3c4a9275d6c8
Anonymized name
3290427
Collection date
2018
Common name
Enterobacter cloacae
Geographic location
United Kingdom
Host health state
carriage
Isolation source
faecal
Sample name
06728494-8749-11e7-a4ed-3c4a9275d6c8
Scientific name
Enterobacter hormaechei
Host
Homo sapiens
Strain
4928STDY7071152
Supplier name
A01676_4_2
SRA
ERS2178560
Models
Generic
Package
Generic.1.0
Submission date
2019-06-29T08:07:40.983
Publication date
2019-06-28T00:00:00.000
Last updated
2024-02-07T00:00:03.000

Assembly methods

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

The organism was changed from 'Enterobacter cloacae' to 'Enterobacter hormaechei' in April 2020.

Additional genomes

Browse all Enterobacter hormaechei genomes (8942)

BioProject

PRJEB22252

Baby_Biome_Study_gastrointestinal_bacterial_genomes

Pathogen Detection Resource

Annotation details

RefSeq
ProviderNCBI RefSeq
NameGCF_902166485.1-RS_2024_04_02
DateApr 2, 2024
Genes4,768
Protein-coding4,608
Software version6.7

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.2)

Completeness: 99.45% (69th Percentile)

Contamination: 1.29%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
derived_species_match
Submitted organism name
Enterobacter hormaechei
Submitted species name
Enterobacter hormaechei

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_001729725.1GCA_001729725.1
Organism nameEnterobacter hormaechei subsp. steigerwaltiiEnterobacter hormaechei
Type categorytypetype
ANI99%99%
Assembly coverage89.93%89.93%
Type assembly coverage92.59%92.59%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeLR607340.1NZ_LR607340.14,975,85655.50

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_902166485.1GCF_902166485.125964_2#28ChromosomeJul 9, 2019