Genome assembly ERR599062_bin.171_MetaBAT_v2.12.1_MAG
- Submitted GenBank assembly
- GCA_913053235.1
- Taxon
- uncultured Alphaproteobacteria bacterium
- Isolate
- ERR599062_bin.171_MetaBAT_v2.12.1_MAG
- WGS project
- CAJXFT01
- Submitter
- EMG
- Date
- Sep 23, 2021
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 3.9 Mb |
Total ungapped length | 3.9 Mb |
Number of contigs | 363 |
Contig N50 | 15.8 kb |
Contig L50 | 76 |
GC percent | 63.5 |
Genome coverage | 15.0x |
Assembly level | Contig |
View sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMEA9694807
- Description
- Metagenome-assembled genome: ERR599062_bin.171_MetaBAT_v2.12.1_MAG
- Comment
- This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR599062 of study ERP001736.
- Submitter
- EBI
- ENA first public
- Sep 16, 2021
- ENA last update
- Sep 16, 2021
- ENA-CHECKLIST
- ERC000047
- External Id
- SAMEA9694807
- INSDC center alias
- EMG
- INSDC center name
- EMG
- INSDC first public
- 2021-09-16T16:25:22Z
- INSDC last update
- 2021-09-16T16:25:22Z
- INSDC status
- public
- Submitter Id
- ERR599062_bin.171_MetaBAT_v2.12.1_MAG
- Assembly quality
- Many fragments with little to no review of assembly other than reporting of standard assembly statistics
- Binning parameters
- Default
- Binning software
- MetaBAT v2.12.1
- Broker name
- EMG broker account, EMBL-EBI
- Collection date
- Mar 12, 2010
- Completeness score
- 94.2
- Completeness software
- CheckM
- Contamination score
- 1.88
- Broad-scale environmental context
- aquatic
- Local-scale environmental context
- marine
- Environmental medium
- water
- Geographic location (latitude)
- 20.8457
- Geographic location (longitude)
- 63.5851
- Investigation type
- metagenome-assembled genome
- Isolation source
- marine metagenome
- Metagenomic source
- marine metagenome
- Project name
- Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
- Sample derived from
- SAMEA2619970
- Sample name
- ERR599062_bin.171_MetaBAT_v2.12.1_MAG
- Sequencing method
- Illumina HiSeq 2000
- Taxonomic identity marker
- multi-marker approach
- SRA
- ERS7419053
- Models
- Generic
- Package
- Generic.1.0
- Submission date
- 2021-09-25T10:52:41.176
- Publication date
- 2021-09-16T00:00:00.000
- Last updated
- 2021-09-16T19:23:19.000
Assembly methods
- Comment
- This is an EMG-produced Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP121137. This sample represents a Metagenome-Assembled Genome (MAG) from the metagenomic run ERR599062.
Additional genomes
Browse all uncultured Alphaproteobacteria bacterium genomes (2767)BioProject
PRJEB37807Recovery of novel prokaryotic genomes associated with aquatic environments, based on assembly and binning of publicly available sequence data.
Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- uncultured Alphaproteobacteria bacterium
- Submitted species name
- uncultured Alphaproteobacteria bacterium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_003574675.1 |
Organism name | n/a | Azohydromonas sediminis |
Type category | n/a | type |
ANI | n/a | 91.3% |
Assembly coverage | n/a | n/a |
Type assembly coverage | n/a | n/a |
Chromosomes
Note: This contig-level genome assembly includes 363 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_913053235.1 | n/a | ERR599062_bin.171_MetaBAT_v2.12.1_MAG | Contig | Sep 23, 2021 |