Genome assembly ERR599062_bin.171_MetaBAT_v2.12.1_MAG

FTP
Actions
Submitted GenBank assembly
GCA_913053235.1
Taxon
uncultured Alphaproteobacteria bacterium
Isolate
ERR599062_bin.171_MetaBAT_v2.12.1_MAG
WGS project
CAJXFT01
Submitter
EMG
Date
Sep 23, 2021

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • genus undefined

Assembly statistics

GenBank
Genome size3.9 Mb
Total ungapped length3.9 Mb
Number of contigs363
Contig N5015.8 kb
Contig L5076
GC percent63.5
Genome coverage15.0x
Assembly levelContig
View sequencesview GenBank sequences

Sample details

BioSample ID
SAMEA9694807
Description
Metagenome-assembled genome: ERR599062_bin.171_MetaBAT_v2.12.1_MAG
Comment
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR599062 of study ERP001736.
Submitter
EBI
ENA first public
Sep 16, 2021
ENA last update
Sep 16, 2021
ENA-CHECKLIST
ERC000047
External Id
SAMEA9694807
INSDC center alias
EMG
INSDC center name
EMG
INSDC first public
2021-09-16T16:25:22Z
INSDC last update
2021-09-16T16:25:22Z
INSDC status
public
Submitter Id
ERR599062_bin.171_MetaBAT_v2.12.1_MAG
Assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
Binning parameters
Default
Binning software
MetaBAT v2.12.1
Broker name
EMG broker account, EMBL-EBI
Collection date
Mar 12, 2010
Completeness score
94.2
Completeness software
CheckM
Contamination score
1.88
Broad-scale environmental context
aquatic
Local-scale environmental context
marine
Environmental medium
water
Geographic location (latitude)
20.8457
Geographic location (longitude)
63.5851
Investigation type
metagenome-assembled genome
Isolation source
marine metagenome
Metagenomic source
marine metagenome
Project name
Seawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
Sample derived from
SAMEA2619970
Sample name
ERR599062_bin.171_MetaBAT_v2.12.1_MAG
Sequencing method
Illumina HiSeq 2000
Taxonomic identity marker
multi-marker approach
SRA
ERS7419053
Models
Generic
Package
Generic.1.0
Submission date
2021-09-25T10:52:41.176
Publication date
2021-09-16T00:00:00.000
Last updated
2021-09-16T19:23:19.000

Assembly methods

Comment
This is an EMG-produced Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP121137. This sample represents a Metagenome-Assembled Genome (MAG) from the metagenomic run ERR599062.

Additional genomes

Browse all uncultured Alphaproteobacteria bacterium genomes (2767)

BioProject

PRJEB37807

Recovery of novel prokaryotic genomes associated with aquatic environments, based on assembly and binning of publicly available sequence data.

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
uncultured Alphaproteobacteria bacterium
Submitted species name
uncultured Alphaproteobacteria bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_003574675.1
Organism name

n/a

Azohydromonas sediminis
Type category

n/a

type
ANI

n/a

91.3%
Assembly coverage

n/a

n/a

Type assembly coverage

n/a

n/a

Chromosomes

Note: This contig-level genome assembly includes 363 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_913053235.1

n/a

ERR599062_bin.171_MetaBAT_v2.12.1_MAGContigSep 23, 2021