Genome assembly ASM293645v2
- NCBI RefSeq assembly
- GCF_002936455.2
- Submitted GenBank assembly
- GCA_002936455.2
- Taxon
- Klebsiella pneumoniae subsp. pneumoniae
- Strain
- CRK0358
- WGS project
- PTFT02
- Submitter
- JCVI
- Date
- Nov 14, 2018
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.7 Mb | 5.7 Mb |
Total ungapped length | 5.7 Mb | 5.7 Mb |
Number of contigs | 130 | 130 |
Contig N50 | 224.8 kb | 224.8 kb |
Contig L50 | 8 | 8 |
GC percent | 57 | 57 |
Genome coverage | 240.8x | 240.8x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN08513449
- Description
- Sample of CRK0358, ARLG_2104
- Comment
- Sample of Klebsiella pneumoniae subsp. pneumoniae ARLG_2104
- Submitter
- JCVI
- Collected by
- Unknown
- Collection date
- 2012
- Geographic location
- USA: Ohio
- Host
- Homo sapiens
- Host disease
- Unknown
- Isolation source
- urine
- Latitude and longitude
- Unknown
- Strain
- CRK0358
- Sub species
- pneumoniae
- SRA
- SRS2943613
- JCVI
- ARLG-2104_biosample
- Models
- Pathogen.cl
- Package
- Pathogen.cl.1.0
- Submission date
- 2018-02-09T12:11:18.433
- Publication date
- 2018-02-09T00:00:00.000
- Last updated
- 2024-10-21T10:11:45.923
Assembly methods
- Sequencing technology
- Illumina NextSeq 500
- Comment
- Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. 3.1.1
Additional genomes
Browse all Klebsiella pneumoniae genomes (79671)BioProject
PRJNA433394Klebsiella pneumoniae Genome sequencing and assembly
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_002936455.2-RS_2024_10_23 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Oct 23, 2024 | Nov 3, 2018 |
Genes | 5,675 | 5,776 |
Protein-coding | 5,428 | 5,524 |
Software version | 6.8 | 4.6 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 98.71% (57th Percentile)
Contamination: 1.37%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Klebsiella pneumoniae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- subspecies_match
- Submitted organism name
- Klebsiella pneumoniae subsp. pneumoniae
- Submitted species name
- Klebsiella pneumoniae
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000788015.1 | GCA_000788015.1 |
Organism name | Klebsiella pneumoniae subsp. pneumoniae | Klebsiella pneumoniae |
Type category | type | type |
ANI | 99.22% | 99.22% |
Assembly coverage | 90.43% | 90.43% |
Type assembly coverage | 89.79% | 89.79% |
Chromosomes
Note: This contig-level genome assembly includes 130 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_002936455.2 | GCF_002936455.2 | ASM293645v2 | Contig | Nov 14, 2018 |