Genome assembly ASM2735848v1

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NCBI RefSeq assembly
GCF_027358485.1
Submitted GenBank assembly
GCA_027358485.1
Taxon
Geobacter sp.
Isolate
clean691
WGS project
DAHVTR01
Submitter
an eLibrary of Microbial Systematics and Genomics
Date
Dec 27, 2022

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome

Assembly statistics

RefSeqGenBank
Genome size3.7 Mb3.7 Mb
Total ungapped length3.7 Mb3.7 Mb
Number of contigs281281
Contig N5018.5 kb18.5 kb
Contig L505656
GC percent6363
Genome coverage12.0x12.0x
Assembly levelContigContig
View sequencesview RefSeq sequences

Sample details

BioSample ID
SAMN28404207
Description
MIMAG Metagenome-assembled Genome sample from Geobacter sp.
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
an eLibrary of Microbial Systematics and Genomics
Isolate
clean691
Collection date
Dec 7, 2016
Depth
not collected
Broad-scale environmental context
not collected
Local-scale environmental context
not collected
Environmental medium
not collected
Geographic location
China: Hunan, Shuikoushan
Isolation source
sediment
Latitude and longitude
26.53451 N 112.60740 E
Derived from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions:SRR13221995
Sample type
metagenomic assembly
ELMSG genome id
LMSG_G000005024.1
ELMSG link
https://www.biosino.org/elmsg/record/MSG077309
Metagenomic
1
Environmental-sample
1
Metagenome source
mine drainage metagenome
Elevation
not collected
Sample name
clean691
Models
MIMAG.sediment
Package
MIMAG.sediment.6.0
Submission date
2022-05-14T04:17:07.320
Publication date
2022-12-29T00:40:50.633
Last updated
2022-12-29T00:40:50.633

Assembly methods

Sequencing technology
Illumina
Assembly method
MEGAHIT v. V1

Additional genomes

Browse all Geobacter sp. genomes (43)

BioProject

PRJNA834572

acid mine drainge Metagenomic assembly

Annotation details

RefSeq
ProviderNCBI RefSeq
NameGCF_027358485.1-RS_2024_07_16
DateJul 16, 2024
Genes3,743
Protein-coding3,576
Software version6.7

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.3)

Completeness: 94.77% (33rd Percentile)

Contamination: 9.28%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Geobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
genus_match
Submitted organism name
Geobacter sp.
Submitted species name
Geobacter sp.

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_000817955.1
Organism name

n/a

Geobacter pickeringii
Type category

n/a

type
ANI

n/a

86.73%
Assembly coverage

n/a

55.45%
Type assembly coverage

n/a

57.02%

Chromosomes

Note: This contig-level genome assembly includes 281 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_027358485.1GCF_027358485.1ASM2735848v1ContigDec 27, 2022