Genome assembly ASM2735848v1
- NCBI RefSeq assembly
- GCF_027358485.1
- Submitted GenBank assembly
- GCA_027358485.1
- Taxon
- Geobacter sp.
- Isolate
- clean691
- WGS project
- DAHVTR01
- Submitter
- an eLibrary of Microbial Systematics and Genomics
- Date
- Dec 27, 2022
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 3.7 Mb | 3.7 Mb |
Total ungapped length | 3.7 Mb | 3.7 Mb |
Number of contigs | 281 | 281 |
Contig N50 | 18.5 kb | 18.5 kb |
Contig L50 | 56 | 56 |
GC percent | 63 | 63 |
Genome coverage | 12.0x | 12.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences |
Sample details
- BioSample ID
- SAMN28404207
- Description
- MIMAG Metagenome-assembled Genome sample from Geobacter sp.
- Comment
- Keywords: GSC:MIxS;MIMAG:6.0
- Submitter
- an eLibrary of Microbial Systematics and Genomics
- Isolate
- clean691
- Collection date
- Dec 7, 2016
- Depth
- not collected
- Broad-scale environmental context
- not collected
- Local-scale environmental context
- not collected
- Environmental medium
- not collected
- Geographic location
- China: Hunan, Shuikoushan
- Isolation source
- sediment
- Latitude and longitude
- 26.53451 N 112.60740 E
- Derived from
- This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions:SRR13221995
- Sample type
- metagenomic assembly
- ELMSG genome id
- LMSG_G000005024.1
- ELMSG link
- https://www.biosino.org/elmsg/record/MSG077309
- Metagenomic
- 1
- Environmental-sample
- 1
- Metagenome source
- mine drainage metagenome
- Elevation
- not collected
- Sample name
- clean691
- Models
- MIMAG.sediment
- Package
- MIMAG.sediment.6.0
- Submission date
- 2022-05-14T04:17:07.320
- Publication date
- 2022-12-29T00:40:50.633
- Last updated
- 2022-12-29T00:40:50.633
Assembly methods
- Sequencing technology
- Illumina
- Assembly method
- MEGAHIT v. V1
Additional genomes
Browse all Geobacter sp. genomes (43)BioProject
PRJNA834572acid mine drainge Metagenomic assembly
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_027358485.1-RS_2024_07_16 |
Date | Jul 16, 2024 |
Genes | 3,743 |
Protein-coding | 3,576 |
Software version | 6.7 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 94.77% (33rd Percentile)
Contamination: 9.28%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Geobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- genus_match
- Submitted organism name
- Geobacter sp.
- Submitted species name
- Geobacter sp.
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_000817955.1 |
Organism name | n/a | Geobacter pickeringii |
Type category | n/a | type |
ANI | n/a | 86.73% |
Assembly coverage | n/a | 55.45% |
Type assembly coverage | n/a | 57.02% |
Chromosomes
Note: This contig-level genome assembly includes 281 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_027358485.1 | GCF_027358485.1 | ASM2735848v1 | Contig | Dec 27, 2022 |