nstd2 (Kidd et al. 2008)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Evan Eichler
- Submitter URL:
- http://hgsv.washington.edu
- Description:
- We implemented an approach to construct clone-based maps of eight human genomes with the aim of systematically cloning and sequencing structural variants more than 8 kbp in length. See Variant Summary counts for nstd2 in dbVar Variant Summary.
- Project:
- PRJNA29893
- Publication(s):
- Kidd et al. 2008
Detailed Information: Download 7458 Variant Regions, Download 10950 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI35 (hg17)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 576 | 900 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 642 | 862 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 477 | 644 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 437 | 622 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 451 | 621 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 412 | 581 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 394 | 625 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 379 | 621 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 308 | 406 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 335 | 428 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 365 | 535 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 356 | 494 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 232 | 294 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 238 | 333 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 230 | 327 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 226 | 363 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 220 | 356 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 193 | 251 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 162 | 292 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 188 | 257 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 92 | 117 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 108 | 186 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 377 | 611 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 5 | 7 | Remapped | NC_000024.10 |
| NT_187514.1 | Chr1|NT_187514.1 | 2 | 3 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 2 | 18 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 4 | 4 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 3 | 10 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 2 | 3 | Remapped | NT_187519.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 3 | 10 | Remapped | NT_187646.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 3 | 3 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 2 | 6 | Remapped | NW_003315907.2 |
| NW_009646195.1 | Chr1|NW_009646195.1 | 1 | 9 | Remapped | NW_009646195.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 2 | 3 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 1 | 1 | Remapped | NW_011332688.1 |
| NW_014040925.1 | Chr1|NW_014040925.1 | 1 | 3 | Remapped | NW_014040925.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 1 | 6 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 1 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 3 | 5 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 1 | 4 | Remapped | NW_018654706.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 1 | 8 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 1 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 1 | 1 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 2 | 4 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 1 | 3 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 3 | 5 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 3 | Remapped | NT_187526.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 1 | 1 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 3 | 3 | Remapped | NT_187529.1 |
| NT_187531.1 | Chr2|NT_187531.1 | 1 | 6 | Remapped | NT_187531.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 2 | 4 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 3 | 6 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 3 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 5 | Remapped | NW_003315909.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 1 | 1 | Remapped | NW_003571033.2 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 1 | 1 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 1 | 11 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 2 | 2 | Remapped | NW_015495299.1 |
| NW_018654709.1 | Chr2|NW_018654709.1 | 1 | 2 | Remapped | NW_018654709.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 2 | 4 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 1 | 2 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 1 | 1 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 1 | 1 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 1 | 1 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 1 | 1 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 1 | 4 | Remapped | NT_187532.1 |
| NT_187533.1 | Chr3|NT_187533.1 | 1 | 1 | Remapped | NT_187533.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 1 | 4 | Remapped | NT_187534.1 |
| NT_187535.1 | Chr3|NT_187535.1 | 1 | 4 | Remapped | NT_187535.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 1 | 1 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 4 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 1 | 4 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 2 | 3 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 1 | 1 | Remapped | NT_187649.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 2 | 9 | Remapped | NW_003315913.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 2 | 2 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 3 | 3 | Remapped | NW_009646197.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 1 | 2 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 2 | 3 | Remapped | NW_019805488.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 1 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 2 | 3 | Remapped | NW_019805490.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 1 | 4 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 3 | 7 | Remapped | NT_187679.1 |
| NT_167250.2 | Chr4|NT_167250.2 | 1 | 1 | Remapped | NT_167250.2 |
| NT_187540.1 | Chr4|NT_187540.1 | 1 | 1 | Remapped | NT_187540.1 |
| NT_187541.1 | Chr4|NT_187541.1 | 1 | 4 | Remapped | NT_187541.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 2 | 7 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 2 | 3 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 5 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 2 | 3 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 2 | 3 | Remapped | NT_187650.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 5 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 4 | Remapped | NW_003315915.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 2 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 1 | 1 | Remapped | NW_013171800.1 |
| NW_013171801.1 | Chr4|NW_013171801.1 | 1 | 2 | Remapped | NW_013171801.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 1 | 5 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 2 | 3 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 2 | 3 | Remapped | NT_187547.1 |
| NT_187549.1 | Chr5|NT_187549.1 | 1 | 2 | Remapped | NT_187549.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 2 | 2 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 2 | 4 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 2 | 3 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 1 | 1 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 1 | 5 | Remapped | NW_003315918.1 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 1 | 3 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 1 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 5 | Remapped | NW_003571036.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 1 | 3 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 2 | 3 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 6 | 22 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 1 | 2 | Remapped | NW_018654712.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 7 | 7 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 10 | 19 | Remapped | NT_167247.2 |
| NT_167248.2 | Chr6|NT_167248.2 | 10 | 17 | Remapped | NT_167248.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 9 | 18 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 9 | 18 | Remapped | NT_167245.2 |
| NT_113891.3 | Chr6|NT_113891.3 | 11 | 15 | Remapped | NT_113891.3 |
| NT_167244.2 | Chr6|NT_167244.2 | 5 | 5 | Remapped | NT_167244.2 |
| NT_187553.1 | Chr6|NT_187553.1 | 2 | 5 | Remapped | NT_187553.1 |
| NT_187554.1 | Chr6|NT_187554.1 | 1 | 2 | Remapped | NT_187554.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 2 | 2 | Remapped | NT_187556.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 1 | 1 | Remapped | NW_003315921.1 |
| NW_009646200.1 | Chr6|NW_009646200.1 | 2 | 2 | Remapped | NW_009646200.1 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 2 | 2 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 1 | 7 | Remapped | NW_013171802.1 |
| NW_013171803.1 | Chr6|NW_013171803.1 | 1 | 2 | Remapped | NW_013171803.1 |
| NW_017363815.1 | Chr6|NW_017363815.1 | 1 | 1 | Remapped | NW_017363815.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 1 | Remapped | NT_187558.1 |
| NT_187559.1 | Chr7|NT_187559.1 | 2 | 2 | Remapped | NT_187559.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 1 | 1 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 2 | 6 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 7 | 23 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 1 | 1 | Remapped | NT_187563.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 2 | 2 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 1 | Remapped | NT_187653.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 1 | 2 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 3 | 12 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 0 | 8 | Remapped | NW_018654715.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 1 | 4 | Remapped | NW_019805493.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 2 | 5 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 9 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 2 | 3 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 4 | 6 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 1 | 1 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 1 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 4 | 4 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 1 | 1 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 3 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 2 | 6 | Remapped | NT_187574.1 |
| NT_187575.1 | Chr8|NT_187575.1 | 1 | 3 | Remapped | NT_187575.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 5 | 26 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 2 | 2 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 2 | 10 | Remapped | NT_187654.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 6 | Remapped | NW_017852931.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 2 | 2 | Remapped | NW_017852932.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 21 | 60 | Remapped | NW_018654717.1 |
| NW_019805494.1 | Chr8|NW_019805494.1 | 1 | 5 | Remapped | NW_019805494.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 1 | 1 | Remapped | NT_187578.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 3 | Remapped | NW_003315931.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 2 | 8 | Remapped | NW_009646201.1 |
| NW_013171804.1 | Chr9|NW_013171804.1 | 1 | 2 | Remapped | NW_013171804.1 |
| NW_013171805.1 | Chr9|NW_013171805.1 | 1 | 2 | Remapped | NW_013171805.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 2 | Remapped | NT_187579.1 |
| NT_187580.1 | Chr10|NT_187580.1 | 1 | 2 | Remapped | NT_187580.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_009646202.1 | Chr10|NW_009646202.1 | 2 | 2 | Remapped | NW_009646202.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 2 | Remapped | NW_013171806.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 4 | 16 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 3 | 9 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 2 | 6 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 2 | 2 | Remapped | NT_187581.1 |
| NT_187582.1 | Chr11|NT_187582.1 | 1 | 1 | Remapped | NT_187582.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 3 | 7 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 2 | 6 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 1 | 1 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 1 | 2 | Remapped | NT_187586.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 6 | Remapped | NW_003315936.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 3 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 3 | 7 | Remapped | NW_011332695.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 1 | 3 | Remapped | NW_013171808.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 2 | 11 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 7 | Remapped | NW_019805495.1 |
| NW_019805496.1 | Chr11|NW_019805496.1 | 1 | 3 | Remapped | NW_019805496.1 |
| NW_019805498.1 | Chr11|NW_019805498.1 | 3 | 3 | Remapped | NW_019805498.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 1 | 2 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 2 | Remapped | NT_187587.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 1 | 1 | Remapped | NT_187589.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 1 | 1 | Remapped | NT_187590.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 2 | Remapped | NW_003315938.1 |
| NW_003315939.2 | Chr12|NW_003315939.2 | 1 | 7 | Remapped | NW_003315939.2 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 2 | 5 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 3 | Remapped | NW_003315941.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 1 | 2 | Remapped | NW_003315942.2 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 2 | 2 | Remapped | NW_003571049.1 |
| NW_009646204.1 | Chr12|NW_009646204.1 | 0 | 15 | Remapped | NW_009646204.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 1 | 1 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 4 | 7 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 4 | 9 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 2 | 5 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 6 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 3 | 6 | Remapped | NT_187592.1 |
| NT_187593.1 | Chr13|NT_187593.1 | 0 | 3 | Remapped | NT_187593.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 2 | 5 | Remapped | NT_187594.1 |
| NT_187595.1 | Chr13|NT_187595.1 | 1 | 3 | Remapped | NT_187595.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 1 | 1 | Remapped | NW_011332698.1 |
| NW_013171810.1 | Chr13|NW_013171810.1 | 1 | 7 | Remapped | NW_013171810.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 2 | 4 | Remapped | NW_013171811.1 |
| NT_187598.1 | Chr14|NT_187598.1 | 1 | 1 | Remapped | NT_187598.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 2 | 5 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 7 | 27 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 7 | 7 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 4 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 4 | 25 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 1 | 3 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 7 | 13 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 1 | 3 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 0 | 1 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 2 | 4 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 1 | 1 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 1 | 1 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 4 | 9 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 7 | 13 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 6 | 10 | Remapped | NT_187607.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 2 | 3 | Remapped | NT_187610.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 0 | 2 | Remapped | NW_003315945.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 4 | Remapped | NW_003315946.1 |
| NW_012132921.1 | Chr16|NW_012132921.1 | 1 | 4 | Remapped | NW_012132921.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 7 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 2 | 4 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 1 | 2 | Remapped | NW_017852933.1 |
| NW_018654723.1 | Chr16|NW_018654723.1 | 1 | 12 | Remapped | NW_018654723.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 2 | 2 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 3 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 2 | 7 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 6 | 11 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 2 | 5 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 8 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 3 | 4 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 2 | 4 | Remapped | NT_187611.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 3 | 6 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 6 | 10 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 1 | 1 | Remapped | NT_187615.1 |
| NT_187616.1 | Chr17|NT_187616.1 | 1 | 9 | Remapped | NT_187616.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 5 | 13 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 2 | 2 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 2 | 7 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 2 | 2 | Remapped | NW_003315955.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 2 | 3 | Remapped | NW_003871092.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 1 | 1 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 5 | Remapped | NW_017363819.1 |
| NW_019805501.1 | Chr17|NW_019805501.1 | 1 | 9 | Remapped | NW_019805501.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 3 | 4 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 3 | 5 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 1 | 2 | Remapped | NT_187617.1 |
| NT_187618.1 | Chr18|NT_187618.1 | 1 | 4 | Remapped | NT_187618.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 3 | 5 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 4 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 3 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 2 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 3 | 5 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 2 | 4 | Remapped | NW_013171814.1 |
| NW_014040928.1 | Chr18|NW_014040928.1 | 1 | 6 | Remapped | NW_014040928.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NW_019805502.1 | Chr18|NW_019805502.1 | 1 | 1 | Remapped | NW_019805502.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 9 | 16 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 6 | 11 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 3 | 4 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 3 | 4 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 3 | 4 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 8 | 13 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 3 | 4 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 5 | 9 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 2 | 2 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 1 | 2 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 1 | 4 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 2 | 2 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 8 | Remapped | NW_003315963.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 2 | 4 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 9 | 15 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 4 | 14 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 1 | 13 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 1 | 2 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 1 | 1 | Remapped | NT_187624.1 |
| NT_187625.1 | Chr20|NT_187625.1 | 1 | 2 | Remapped | NT_187625.1 |
| NW_003315966.2 | Chr20|NW_003315966.2 | 1 | 3 | Remapped | NW_003315966.2 |
| NT_187626.1 | Chr21|NT_187626.1 | 2 | 2 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 2 | 3 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 7 | Remapped | NW_003315967.2 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 2 | 4 | Remapped | NW_003315968.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 8 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 2 | 8 | Remapped | NT_187682.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 3 | 10 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 2 | 7 | Remapped | NT_187630.1 |
| NT_187631.1 | Chr22|NT_187631.1 | 2 | 3 | Remapped | NT_187631.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 0 | 3 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 16 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1 | Remapped | NW_003315972.2 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 1 | 6 | Remapped | NW_017363820.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 2 | 2 | Remapped | NT_187635.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 579 | 918 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 642 | 861 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 477 | 644 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 437 | 622 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 452 | 622 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 412 | 582 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 393 | 628 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 382 | 637 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 306 | 409 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 335 | 432 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 365 | 535 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 354 | 492 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 232 | 295 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 239 | 337 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 230 | 327 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 226 | 359 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 211 | 338 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 193 | 251 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 160 | 290 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 188 | 259 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 92 | 115 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 110 | 199 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 372 | 590 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 5 | 7 | Remapped | NC_000024.9 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 3 | 3 | Remapped | NW_003315906.1 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 2 | 6 | Remapped | NW_003315907.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 3 | 11 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 10 | 31 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 3 | 9 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 2 | 4 | Remapped | NW_003871057.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 3 | Remapped | NW_003315908.1 |
| NW_003315909.1 | Chr2|NW_003315909.1 | 1 | 5 | Remapped | NW_003315909.1 |
| NW_003571033.2 | Chr2|NW_003571033.2 | 1 | 1 | Remapped | NW_003571033.2 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 1 | 1 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 1 | 2 | Remapped | NW_003315910.1 |
| NW_003315913.1 | Chr3|NW_003315913.1 | 2 | 9 | Remapped | NW_003315913.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 2 | 2 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 1 | 1 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 2 | 2 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 2 | 2 | Remapped | NW_004775426.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 1 | Remapped | NT_167250.1 |
| NW_003315914.1 | Chr4|NW_003315914.1 | 1 | 5 | Remapped | NW_003315914.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 4 | Remapped | NW_003315915.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 1 | 7 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 2 | 4 | Remapped | NW_004775427.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 1 | 1 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 1 | 5 | Remapped | NW_003315918.1 |
| NW_003315919.1 | Chr5|NW_003315919.1 | 1 | 3 | Remapped | NW_003315919.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 1 | Remapped | NW_003315920.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 5 | Remapped | NW_003571036.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 1 | 1 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 3 | 5 | Remapped | NW_004775428.1 |
| NT_113891.2 | Chr6|NT_113891.2 | 11 | 16 | Remapped | NT_113891.2 |
| NT_167244.1 | Chr6|NT_167244.1 | 5 | 5 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 9 | 18 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 7 | 7 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 10 | 19 | Remapped | NT_167247.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 10 | 17 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 9 | 18 | Remapped | NT_167249.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 1 | 1 | Remapped | NW_003315921.1 |
| NW_003871063.1 | Chr6|NW_003871063.1 | 1 | 1 | Remapped | NW_003871063.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 2 | 13 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 2 | 2 | Remapped | NW_004504300.1 |
| NW_003315922.2 | Chr7|NW_003315922.2 | 1 | 1 | Remapped | NW_003315922.2 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 2 | 9 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 2 | 8 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 8 | 24 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 1 | 0 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 8 | 15 | Remapped | NW_003871064.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 0 | 2 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 6 | 16 | Remapped | NW_003315923.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 4 | 25 | Remapped | NW_003571042.1 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 0 | 6 | Remapped | NW_004775431.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 2 | 8 | Remapped | NW_003315925.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_003315931.1 | Chr9|NW_003315931.1 | 1 | 3 | Remapped | NW_003315931.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 1 | 1 | Remapped | NW_003871067.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 1 | 1 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 3 | 3 | Remapped | NW_004070869.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 1 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 4 | 14 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 1 | 1 | Remapped | NW_003871069.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 1 | 3 | Remapped | NW_003871071.1 |
| NW_003315936.1 | Chr11|NW_003315936.1 | 1 | 6 | Remapped | NW_003315936.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 1 | Remapped | NW_003571045.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 3 | 3 | Remapped | NW_003871072.2 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 6 | Remapped | NW_003871073.1 |
| NW_003871074.1 | Chr11|NW_003871074.1 | 1 | 1 | Remapped | NW_003871074.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 2 | 2 | Remapped | NW_003871077.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 1 | 1 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 1 | 1 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 1 | 1 | Remapped | NW_003871081.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 3 | 3 | Remapped | NW_004070871.1 |
| NW_003315938.1 | Chr12|NW_003315938.1 | 1 | 2 | Remapped | NW_003315938.1 |
| NW_003315939.1 | Chr12|NW_003315939.1 | 1 | 7 | Remapped | NW_003315939.1 |
| NW_003315940.1 | Chr12|NW_003315940.1 | 2 | 5 | Remapped | NW_003315940.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 3 | Remapped | NW_003315941.1 |
| NW_003315942.2 | Chr12|NW_003315942.2 | 1 | 1 | Remapped | NW_003315942.2 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 2 | 2 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 1 | 1 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 1 | 1 | Remapped | NW_004504303.2 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 11 | 31 | Remapped | NW_004166863.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 0 | 4 | Remapped | NW_003315943.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 4 | 9 | Remapped | NW_003315944.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 1 | 1 | Remapped | NW_003871084.1 |
| NW_003315946.1 | Chr16|NW_003315946.1 | 1 | 4 | Remapped | NW_003315946.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 3 | 4 | Remapped | NT_167251.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 3 | 4 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 2 | 2 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 0 | 5 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 3 | 3 | Remapped | NW_003315950.2 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 2 | 2 | Remapped | NW_003315953.1 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 2 | 7 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 2 | 2 | Remapped | NW_003315955.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 1 | 6 | Remapped | NW_003571052.1 |
| NW_003871086.1 | Chr17|NW_003871086.1 | 1 | 1 | Remapped | NW_003871086.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 2 | 9 | Remapped | NW_003871087.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 2 | 2 | Remapped | NW_003871090.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 0 | 6 | Remapped | NW_003871093.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 5 | 13 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 1 | 1 | Remapped | NW_004166864.2 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 3 | 6 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 3 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 2 | 3 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 2 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 3 | 4 | Remapped | NW_003315961.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 2 | 2 | Remapped | NW_003315962.1 |
| NW_003315963.1 | Chr19|NW_003315963.1 | 2 | 8 | Remapped | NW_003315963.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 2 | 4 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 1 | 2 | Remapped | NW_003571053.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 3 | 3 | Remapped | NW_003571060.1 |
| NW_003571061.1 | Chr19|NW_003571061.1 | 0 | 1 | Remapped | NW_003571061.1 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 3 | 10 | Remapped | NW_003871094.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 3 | 3 | Remapped | NW_004775434.1 |
| NW_003315966.1 | Chr20|NW_003315966.1 | 1 | 3 | Remapped | NW_003315966.1 |
| NW_003315967.1 | Chr21|NW_003315967.1 | 1 | 7 | Remapped | NW_003315967.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 2 | 4 | Remapped | NW_003315968.1 |
| NW_003315969.1 | Chr21|NW_003315969.1 | 1 | 1 | Remapped | NW_003315969.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 1 | 8 | Remapped | NW_003315970.1 |
| NW_003315971.2 | Chr22|NW_003315971.2 | 1 | 4 | Remapped | NW_003315971.2 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 1 | 1 | Remapped | NW_003315972.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 1 | 1 | Remapped | NW_003871096.1 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 2 | 2 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 1 | 1 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 3 | 3 | Remapped | NW_003871100.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 10 | 39 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 10 | 21 | Remapped | NW_004070877.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 2 | 2 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 16 | 39 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 1 | 1 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 3 | 5 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 1 | 4 | Remapped | NW_004070883.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 2 | 15 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 1 | 7 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 4 | 8 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 2 | 6 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 3 | 4 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 21 | 41 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 3 | 3 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 7 | 19 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 1 | 1 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 2 | 18 | Remapped | NW_004166866.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.8 | Chr1 | 580 | 919 | Submitted | NC_000001.8 |
| NC_000002.9 | Chr2 | 642 | 861 | Submitted | NC_000002.9 |
| NC_000003.9 | Chr3 | 477 | 644 | Submitted | NC_000003.9 |
| NC_000004.9 | Chr4 | 437 | 622 | Submitted | NC_000004.9 |
| NC_000005.8 | Chr5 | 452 | 624 | Submitted | NC_000005.8 |
| NC_000006.9 | Chr6 | 412 | 582 | Submitted | NC_000006.9 |
| NC_000007.11 | Chr7 | 395 | 641 | Submitted | NC_000007.11 |
| NC_000008.9 | Chr8 | 383 | 638 | Submitted | NC_000008.9 |
| NC_000009.9 | Chr9 | 309 | 417 | Submitted | NC_000009.9 |
| NC_000010.8 | Chr10 | 335 | 432 | Submitted | NC_000010.8 |
| NC_000011.8 | Chr11 | 365 | 535 | Submitted | NC_000011.8 |
| NC_000012.9 | Chr12 | 356 | 494 | Submitted | NC_000012.9 |
| NC_000013.9 | Chr13 | 232 | 295 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 239 | 337 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 230 | 327 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 226 | 359 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 220 | 360 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 193 | 251 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 163 | 294 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 188 | 259 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 92 | 115 | Submitted | NC_000021.7 |
| NC_000022.8 | Chr22 | 110 | 199 | Submitted | NC_000022.8 |
| NC_000023.8 | ChrX | 378 | 612 | Submitted | NC_000023.8 |
| NC_000024.7 | ChrY | 5 | 7 | Submitted | NC_000024.7 |
| NT_077949.1 | Chr1|NT_077949.1 | 4 | 10 | Submitted | NT_077949.1 |
| NT_077964.3 | Chr1|NT_077964.3 | 2 | 2 | Submitted | NT_077964.3 |
| NT_077970.1 | Chr1|NT_077970.1 | 1 | 1 | Submitted | NT_077970.1 |
| NT_079486.1 | Chr1|NT_079486.1 | 1 | 1 | Submitted | NT_079486.1 |
| NT_077995.1 | Chr2|NT_077995.1 | 2 | 13 | Submitted | NT_077995.1 |
| NT_078016.3 | Chr4|NT_078016.3 | 1 | 1 | Submitted | NT_078016.3 |
| NT_091700.1 | Chr4|NT_091700.1 | 2 | 4 | Submitted | NT_091700.1 |
| NT_078020.3 | Chr6|NT_078020.3 | 3 | 16 | Submitted | NT_078020.3 |
| NT_079515.1 | Chr7|NT_079515.1 | 1 | 13 | Submitted | NT_079515.1 |
| NT_079516.1 | Chr7|NT_079516.1 | 3 | 33 | Submitted | NT_079516.1 |
| NT_086714.1 | Chr7|NT_086714.1 | 1 | 4 | Submitted | NT_086714.1 |
| NT_078074.1 | Chr9|NT_078074.1 | 1 | 1 | Submitted | NT_078074.1 |
| NT_091701.1 | Chr12|NT_091701.1 | 1 | 4 | Submitted | NT_091701.1 |
| NT_079546.1 | Chr15|NT_079546.1 | 2 | 3 | Submitted | NT_079546.1 |
| NT_079547.1 | Chr15|NT_079547.1 | 2 | 2 | Submitted | NT_079547.1 |
| NT_078102.1 | Chr17|NT_078102.1 | 1 | 1 | Submitted | NT_078102.1 |
| NT_079556.1 | Chr17|NT_079556.1 | 1 | 1 | Submitted | NT_079556.1 |
| NT_079557.1 | Chr17|NT_079557.1 | 2 | 6 | Submitted | NT_079557.1 |
| NT_079558.1 | Chr17|NT_079558.1 | 1 | 2 | Submitted | NT_079558.1 |
| NT_079559.1 | Chr17|NT_079559.1 | 1 | 2 | Submitted | NT_079559.1 |
| NT_079560.2 | Chr17|NT_079560.2 | 1 | 2 | Submitted | NT_079560.2 |
| NT_079561.1 | Chr17|NT_079561.1 | 1 | 2 | Submitted | NT_079561.1 |
| NT_079563.1 | Chr17|NT_079563.1 | 1 | 1 | Submitted | NT_079563.1 |
| NT_079564.1 | Chr17|NT_079564.1 | 1 | 1 | Submitted | NT_079564.1 |
| NT_079565.2 | Chr17|NT_079565.2 | 1 | 1 | Submitted | NT_079565.2 |
| NT_079566.1 | Chr17|NT_079566.1 | 2 | 2 | Submitted | NT_079566.1 |
| NT_079567.1 | Chr17|NT_079567.1 | 1 | 1 | Submitted | NT_079567.1 |
| NT_079568.1 | Chr17|NT_079568.1 | 1 | 1 | Submitted | NT_079568.1 |
| NT_079569.2 | Chr17|NT_079569.2 | 1 | 1 | Submitted | NT_079569.2 |
| NT_079570.1 | Chr17|NT_079570.1 | 3 | 7 | Submitted | NT_079570.1 |
| NT_091702.1 | Chr17|NT_091702.1 | 1 | 1 | Submitted | NT_091702.1 |
| NT_086901.1 | Chr19|NT_086901.1 | 2 | 4 | Submitted | NT_086901.1 |
| NT_078109.1 | ChrX|NT_078109.1 | 2 | 3 | Submitted | NT_078109.1 |
| NT_078110.2 | ChrX|NT_078110.2 | 2 | 4 | Submitted | NT_078110.2 |
| NT_078116.3 | ChrX|NT_078116.3 | 1 | 4 | Submitted | NT_078116.3 |
| NT_079575.1 | ChrX|NT_079575.1 | 1 | 1 | Submitted | NT_079575.1 |
| NT_079578.2 | ChrX|NT_079578.2 | 1 | 1 | Submitted | NT_079578.2 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 580 | 551 | 4 | 5 | 0 | 20 | 919 | 818 | 8 | 36 | 0 | 57 |
| NC_000002.9 | Chr2 | 642 | 624 | 3 | 9 | 0 | 6 | 861 | 798 | 5 | 42 | 0 | 16 |
| NC_000003.9 | Chr3 | 477 | 463 | 4 | 0 | 0 | 10 | 644 | 600 | 12 | 14 | 0 | 18 |
| NC_000004.9 | Chr4 | 437 | 425 | 5 | 0 | 0 | 7 | 622 | 596 | 5 | 0 | 0 | 21 |
| NC_000005.8 | Chr5 | 452 | 436 | 2 | 5 | 0 | 9 | 624 | 587 | 3 | 11 | 2 | 21 |
| NC_000006.9 | Chr6 | 412 | 391 | 3 | 2 | 0 | 16 | 582 | 520 | 12 | 14 | 0 | 36 |
| NC_000007.11 | Chr7 | 395 | 370 | 3 | 2 | 0 | 20 | 641 | 557 | 27 | 11 | 0 | 46 |
| NC_000008.9 | Chr8 | 383 | 361 | 8 | 5 | 0 | 9 | 638 | 522 | 35 | 35 | 0 | 46 |
| NC_000009.9 | Chr9 | 309 | 296 | 1 | 2 | 2 | 8 | 417 | 382 | 2 | 10 | 7 | 16 |
| NC_000010.8 | Chr10 | 335 | 323 | 1 | 3 | 0 | 8 | 432 | 407 | 1 | 4 | 0 | 20 |
| NC_000011.8 | Chr11 | 365 | 349 | 0 | 1 | 0 | 15 | 535 | 509 | 0 | 1 | 0 | 25 |
| NC_000012.9 | Chr12 | 356 | 346 | 0 | 2 | 0 | 8 | 494 | 471 | 0 | 3 | 0 | 20 |
| NC_000013.9 | Chr13 | 232 | 232 | 0 | 0 | 0 | 0 | 295 | 295 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 239 | 226 | 2 | 0 | 0 | 11 | 337 | 303 | 3 | 0 | 0 | 31 |
| NC_000015.8 | Chr15 | 230 | 220 | 2 | 3 | 0 | 5 | 327 | 291 | 5 | 17 | 0 | 14 |
| NC_000016.8 | Chr16 | 226 | 224 | 1 | 0 | 0 | 1 | 359 | 354 | 1 | 0 | 0 | 4 |
| NC_000017.9 | Chr17 | 220 | 188 | 7 | 4 | 0 | 21 | 360 | 289 | 13 | 12 | 0 | 46 |
| NC_000018.8 | Chr18 | 193 | 181 | 1 | 0 | 0 | 11 | 251 | 231 | 1 | 0 | 0 | 19 |
| NC_000019.8 | Chr19 | 163 | 147 | 0 | 3 | 0 | 13 | 294 | 260 | 0 | 5 | 0 | 29 |
| NC_000020.9 | Chr20 | 188 | 186 | 1 | 0 | 0 | 1 | 259 | 255 | 1 | 0 | 0 | 3 |
| NC_000021.7 | Chr21 | 92 | 87 | 0 | 0 | 0 | 5 | 115 | 95 | 0 | 0 | 0 | 20 |
| NC_000022.8 | Chr22 | 110 | 102 | 4 | 1 | 0 | 3 | 199 | 186 | 6 | 1 | 0 | 6 |
| NC_000023.8 | ChrX | 378 | 276 | 3 | 10 | 0 | 89 | 612 | 360 | 11 | 24 | 0 | 217 |
| NC_000024.7 | ChrY | 5 | 4 | 0 | 1 | 0 | 0 | 7 | 5 | 0 | 2 | 0 | 0 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.8 | Chr1 | 580 | 516 | 23 | 6 | 4 | 31 | 919 | 718 | 52 | 42 | 18 | 89 |
| NC_000002.9 | Chr2 | 642 | 591 | 17 | 9 | 0 | 25 | 861 | 726 | 31 | 45 | 0 | 59 |
| NC_000003.9 | Chr3 | 477 | 441 | 10 | 3 | 0 | 23 | 644 | 558 | 22 | 12 | 0 | 52 |
| NC_000004.9 | Chr4 | 437 | 405 | 12 | 2 | 0 | 18 | 622 | 549 | 23 | 3 | 0 | 47 |
| NC_000005.8 | Chr5 | 452 | 418 | 6 | 4 | 1 | 23 | 624 | 545 | 8 | 10 | 3 | 58 |
| NC_000006.9 | Chr6 | 412 | 370 | 7 | 9 | 0 | 26 | 582 | 477 | 9 | 49 | 1 | 46 |
| NC_000007.11 | Chr7 | 395 | 357 | 11 | 4 | 1 | 22 | 641 | 522 | 32 | 33 | 4 | 50 |
| NC_000008.9 | Chr8 | 383 | 315 | 10 | 6 | 2 | 50 | 638 | 415 | 22 | 56 | 7 | 138 |
| NC_000009.9 | Chr9 | 309 | 296 | 2 | 3 | 1 | 7 | 417 | 378 | 3 | 7 | 9 | 20 |
| NC_000010.8 | Chr10 | 335 | 321 | 5 | 3 | 0 | 6 | 432 | 399 | 10 | 10 | 4 | 9 |
| NC_000011.8 | Chr11 | 365 | 328 | 14 | 0 | 0 | 23 | 535 | 459 | 14 | 1 | 0 | 61 |
| NC_000012.9 | Chr12 | 356 | 327 | 3 | 1 | 0 | 25 | 494 | 413 | 3 | 8 | 0 | 70 |
| NC_000013.9 | Chr13 | 232 | 219 | 2 | 1 | 0 | 10 | 295 | 261 | 2 | 4 | 0 | 28 |
| NC_000014.7 | Chr14 | 239 | 207 | 7 | 2 | 1 | 22 | 337 | 245 | 17 | 8 | 1 | 66 |
| NC_000015.8 | Chr15 | 230 | 206 | 5 | 4 | 0 | 15 | 327 | 265 | 7 | 24 | 0 | 31 |
| NC_000016.8 | Chr16 | 226 | 201 | 6 | 2 | 0 | 17 | 359 | 293 | 14 | 2 | 0 | 50 |
| NC_000017.9 | Chr17 | 220 | 168 | 11 | 6 | 0 | 35 | 360 | 222 | 18 | 34 | 3 | 83 |
| NC_000018.8 | Chr18 | 193 | 170 | 3 | 1 | 0 | 19 | 251 | 208 | 3 | 1 | 0 | 39 |
| NC_000019.8 | Chr19 | 163 | 131 | 8 | 1 | 0 | 23 | 294 | 215 | 15 | 1 | 0 | 63 |
| NC_000020.9 | Chr20 | 188 | 177 | 6 | 1 | 0 | 4 | 259 | 235 | 7 | 7 | 2 | 8 |
| NC_000021.7 | Chr21 | 92 | 75 | 8 | 0 | 0 | 9 | 115 | 82 | 8 | 0 | 0 | 25 |
| NC_000022.8 | Chr22 | 110 | 82 | 15 | 3 | 0 | 10 | 199 | 118 | 33 | 13 | 0 | 35 |
| NC_000023.8 | ChrX | 378 | 293 | 66 | 15 | 1 | 3 | 612 | 376 | 153 | 74 | 1 | 8 |
| NC_000024.7 | ChrY | 5 | 3 | 0 | 2 | 0 | 0 | 7 | 4 | 0 | 3 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Description:
- Eight individuals plus 1 Control
- Size:
- 9
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Age | Subject Phenotype |
|---|---|---|---|---|---|---|
| SAMN00001588 | B-Lymphocyte | NA18517 | Female | YORUBA | Not reported | |
| NA12156 | B-Lymphocyte | NA12156 | Female | UTAH/MORMON | 81 Years | Not reported |
| NA18507 | B-Lymphocyte | NA18507 | Male | YORUBA | Not reported | |
| SAMN00000376 | B-Lymphocyte | NA15510 | Female | Not reported | ||
| NA12878 | B-Lymphocyte | NA12878 | Female | UTAH/MORMON | Not reported | |
| NA19129 | B-Lymphocyte | NA19129 | Female | YORUBA | Not reported | |
| NA18956 | B-Lymphocyte | NA18956 | Female | JAPANESE | Not reported | |
| NA19240 | B-Lymphocyte | NA19240 | Female | YORUBA | Not reported | |
| NA18555 | B-Lymphocyte | NA18555 | Female | HAN CHINESE | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Paired-end mapping | Capillary | ABC10, ABC11, ABC12, ABC13, ABC14, ABC7, ABC8, ABC9, WI2 | 10,950 |
| 2 | Validation | Sequencing | Sequence alignment | 235 | ||
| 3 | Validation | Multiple complete digestion | MCD analysis | 1,621 | ||
| 4 | Validation | Sequencing | One end anchored assembly | 560 | ||
| 5 | Validation | Oligo aCGH | Probe signal intensity | 687 | ||
| 6 | Validation | Oligo aCGH | Probe signal intensity | 882 | ||
| 7 | Validation | FISH | Manual observation | 26 |
Validations
| Experiment ID | Method | Analysis | Number of Variant Calls Validated |
|---|---|---|---|
| 2 | Sequencing | Sequence alignment | 235 |
| 3 | Multiple complete digestion | MCD analysis | 1,621 |
| 4 | Sequencing | One end anchored assembly | 560 |
| 5 | Oligo aCGH | Probe signal intensity | 687 |
| 6 | Oligo aCGH | Probe signal intensity | 882 |
| 7 | FISH | Manual observation | 26 |