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nstd97 (Lou et al. 2014)

Organism:
Human
Study Type:
Control Set
Submitter:
Haiyi Lou
Description:
This study consists of three admixed populations (Kazakh, Kirgiz and Uyghur) in Xinjiang province, northwest of China. We used Affymetrix Genome-Wide Human SNP Array 6.0 to detect the copy number variations in these populations. The samples were all normal individuals which can be used as control set for future study. See Variant Summary counts for nstd97 in dbVar Variant Summary.
Publication(s):
Lou et al. 2014

Detailed Information: Download 2558 Variant Regions, Download 18875 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr12001,491RemappedNC_000001.11
NC_000002.12Chr21801,225RemappedNC_000002.12
NC_000003.12Chr3132974RemappedNC_000003.12
NC_000004.12Chr41661,707RemappedNC_000004.12
NC_000005.10Chr51341,347RemappedNC_000005.10
NC_000006.12Chr61731,479RemappedNC_000006.12
NC_000007.14Chr71511,172RemappedNC_000007.14
NC_000008.11Chr81581,034RemappedNC_000008.11
NC_000009.12Chr91191,018RemappedNC_000009.12
NC_000010.11Chr10110703RemappedNC_000010.11
NC_000011.10Chr11111777RemappedNC_000011.10
NC_000012.12Chr1284951RemappedNC_000012.12
NC_000013.11Chr1393410RemappedNC_000013.11
NC_000014.9Chr1479382RemappedNC_000014.9
NC_000015.10Chr15120557RemappedNC_000015.10
NC_000016.10Chr161471,119RemappedNC_000016.10
NC_000017.11Chr17102599RemappedNC_000017.11
NC_000018.10Chr1844194RemappedNC_000018.10
NC_000019.10Chr1978674RemappedNC_000019.10
NC_000020.11Chr2027180RemappedNC_000020.11
NC_000021.9Chr2177347RemappedNC_000021.9
NC_000022.11Chr2241273RemappedNC_000022.11
NT_187516.1Chr1|NT_187516.111RemappedNT_187516.1
NW_012132914.1Chr1|NW_012132914.123RemappedNW_012132914.1
NW_017852928.1Chr1|NW_017852928.1262RemappedNW_017852928.1
NW_018654707.1Chr1|NW_018654707.16134RemappedNW_018654707.1
NT_187523.1Chr2|NT_187523.188RemappedNT_187523.1
NT_187647.1Chr2|NT_187647.188RemappedNT_187647.1
NW_012132915.1Chr2|NW_012132915.111RemappedNW_012132915.1
NT_187678.1Chr3|NT_187678.133RemappedNT_187678.1
NT_187688.1Chr3|NT_187688.133RemappedNT_187688.1
NT_187689.1Chr3|NT_187689.133RemappedNT_187689.1
NT_187690.1Chr3|NT_187690.133RemappedNT_187690.1
NT_187691.1Chr3|NT_187691.133RemappedNT_187691.1
NT_187532.1Chr3|NT_187532.133RemappedNT_187532.1
NT_187534.1Chr3|NT_187534.111RemappedNT_187534.1
NT_187536.1Chr3|NT_187536.112RemappedNT_187536.1
NT_187537.1Chr3|NT_187537.115RemappedNT_187537.1
NT_187539.1Chr3|NT_187539.1110RemappedNT_187539.1
NT_187649.1Chr3|NT_187649.133RemappedNT_187649.1
NW_003315913.1Chr3|NW_003315913.111RemappedNW_003315913.1
NW_019805488.1Chr3|NW_019805488.124RemappedNW_019805488.1
NT_187542.1Chr4|NT_187542.111RemappedNT_187542.1
NW_003315915.1Chr4|NW_003315915.1542RemappedNW_003315915.1
NW_013171800.1Chr4|NW_013171800.112RemappedNW_013171800.1
NW_003315920.1Chr5|NW_003315920.111RemappedNW_003315920.1
NW_016107298.1Chr5|NW_016107298.148RemappedNW_016107298.1
NT_187558.1Chr7|NT_187558.1334RemappedNT_187558.1
NT_187559.1Chr7|NT_187559.133RemappedNT_187559.1
NT_187560.1Chr7|NT_187560.11130RemappedNT_187560.1
NT_187561.1Chr7|NT_187561.122RemappedNT_187561.1
NT_187562.1Chr7|NT_187562.1443RemappedNT_187562.1
NT_187653.1Chr7|NT_187653.1334RemappedNT_187653.1
NW_017852929.1Chr7|NW_017852929.111RemappedNW_017852929.1
NW_018654714.1Chr7|NW_018654714.112118RemappedNW_018654714.1
NT_187565.1Chr8|NT_187565.122RemappedNT_187565.1
NT_187570.1Chr8|NT_187570.11215RemappedNT_187570.1
NT_187576.1Chr8|NT_187576.110191RemappedNT_187576.1
NT_187654.1Chr8|NT_187654.1346RemappedNT_187654.1
NW_018654717.1Chr8|NW_018654717.121122RemappedNW_018654717.1
NW_003315928.1Chr9|NW_003315928.111RemappedNW_003315928.1
NW_009646201.1Chr9|NW_009646201.111RemappedNW_009646201.1
NW_003315934.1Chr10|NW_003315934.111RemappedNW_003315934.1
NW_013171806.1Chr10|NW_013171806.1381RemappedNW_013171806.1
NT_187583.1Chr11|NT_187583.1136RemappedNT_187583.1
NW_003871074.1Chr11|NW_003871074.111RemappedNW_003871074.1
NW_011332695.1Chr11|NW_011332695.1136RemappedNW_011332695.1
NW_019805495.1Chr11|NW_019805495.1550RemappedNW_019805495.1
NW_019805497.1Chr11|NW_019805497.111RemappedNW_019805497.1
NT_187658.1Chr12|NT_187658.1518RemappedNT_187658.1
NT_187587.1Chr12|NT_187587.144RemappedNT_187587.1
NW_003571050.1Chr12|NW_003571050.111RemappedNW_003571050.1
NW_011332696.1Chr12|NW_011332696.129RemappedNW_011332696.1
NW_018654718.1Chr12|NW_018654718.114RemappedNW_018654718.1
NW_019805499.1Chr12|NW_019805499.1120RemappedNW_019805499.1
NW_011332700.1Chr13|NW_011332700.111RemappedNW_011332700.1
NT_187600.1Chr14|NT_187600.11520RemappedNT_187600.1
NT_187601.1Chr14|NT_187601.112RemappedNT_187601.1
NT_187660.1Chr15|NT_187660.179RemappedNT_187660.1
NW_011332701.1Chr15|NW_011332701.169RemappedNW_011332701.1
NW_012132920.1Chr15|NW_012132920.111RemappedNW_012132920.1
NT_187607.1Chr16|NT_187607.11316RemappedNT_187607.1
NW_003315945.1Chr16|NW_003315945.1258RemappedNW_003315945.1
NW_012132921.1Chr16|NW_012132921.123RemappedNW_012132921.1
NW_017852933.1Chr16|NW_017852933.122RemappedNW_017852933.1
NT_187661.1Chr17|NT_187661.11493RemappedNT_187661.1
NT_187663.1Chr17|NT_187663.127229RemappedNT_187663.1
NW_003871093.1Chr17|NW_003871093.15119RemappedNW_003871093.1
NT_167251.2Chr17|NT_167251.2110RemappedNT_167251.2
NT_187614.1Chr17|NT_187614.11088RemappedNT_187614.1
NW_003315953.2Chr17|NW_003315953.234RemappedNW_003315953.2
NW_003871091.1Chr17|NW_003871091.112RemappedNW_003871091.1
NW_003871092.1Chr17|NW_003871092.124RemappedNW_003871092.1
NW_017363819.1Chr17|NW_017363819.1343RemappedNW_017363819.1
NT_187665.1Chr18|NT_187665.111RemappedNT_187665.1
NW_003315956.1Chr18|NW_003315956.122RemappedNW_003315956.1
NW_003315958.1Chr18|NW_003315958.111RemappedNW_003315958.1
NW_014040928.1Chr18|NW_014040928.111RemappedNW_014040928.1
NW_019805502.1Chr18|NW_019805502.111RemappedNW_019805502.1
NT_187693.1Chr19|NT_187693.11529RemappedNT_187693.1
NW_003571061.2Chr19|NW_003571061.2312RemappedNW_003571061.2
NW_003571060.1Chr19|NW_003571060.1414RemappedNW_003571060.1
NT_187620.1Chr19|NT_187620.111RemappedNT_187620.1
NW_003315965.1Chr19|NW_003315965.111RemappedNW_003315965.1
NW_003571054.1Chr19|NW_003571054.1414RemappedNW_003571054.1
NW_009646206.1Chr19|NW_009646206.111RemappedNW_009646206.1
NT_187627.1Chr21|NT_187627.111RemappedNT_187627.1
NW_003315968.2Chr21|NW_003315968.2761RemappedNW_003315968.2
NT_187629.1Chr22|NT_187629.111RemappedNT_187629.1
NT_187633.1Chr22|NT_187633.16210RemappedNT_187633.1
NW_003315972.2Chr22|NW_003315972.2150RemappedNW_003315972.2
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr12001,491SubmittedNC_000001.10
NC_000002.11Chr21811,226SubmittedNC_000002.11
NC_000003.11Chr3132974SubmittedNC_000003.11
NC_000004.11Chr41661,707SubmittedNC_000004.11
NC_000005.9Chr51341,347SubmittedNC_000005.9
NC_000006.11Chr61731,479SubmittedNC_000006.11
NC_000007.13Chr71511,172SubmittedNC_000007.13
NC_000008.10Chr81611,155SubmittedNC_000008.10
NC_000009.11Chr91191,018SubmittedNC_000009.11
NC_000010.10Chr10113707SubmittedNC_000010.10
NC_000011.9Chr11111777SubmittedNC_000011.9
NC_000012.11Chr1284951SubmittedNC_000012.11
NC_000013.10Chr1393410SubmittedNC_000013.10
NC_000014.8Chr1485390SubmittedNC_000014.8
NC_000015.9Chr15121558SubmittedNC_000015.9
NC_000016.9Chr161471,119SubmittedNC_000016.9
NC_000017.10Chr17107605SubmittedNC_000017.10
NC_000018.9Chr1844194SubmittedNC_000018.9
NC_000019.9Chr1989689SubmittedNC_000019.9
NC_000020.10Chr2027180SubmittedNC_000020.10
NC_000021.8Chr2177347SubmittedNC_000021.8
NC_000022.10Chr2243379SubmittedNC_000022.10

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.10Chr12001692000111,4911,2256600200
NC_000002.11Chr218115777191,2261,17830819
NC_000003.11Chr31321184001097494260026
NC_000004.11Chr416615180071,7071,5481140045
NC_000005.9Chr513412810051,3471,3353009
NC_000006.11Chr617316166001,4791,371109800
NC_000007.13Chr7151119600261,172835600331
NC_000008.10Chr8161118210401,155902210250
NC_000009.11Chr911911511021,0181,0141102
NC_000010.10Chr101139321134707608211482
NC_000011.9Chr1111198500877768360088
NC_000012.11Chr1284701001395189510055
NC_000013.10Chr139390200141038029001
NC_000014.8Chr1485399156163902961351822
NC_000015.9Chr15121104611955853771112
NC_000016.9Chr161471161110191,1199252113079
NC_000017.10Chr171075106050605111070487
NC_000018.9Chr18443900051941890005
NC_000019.9Chr1989793007689649230017
NC_000020.10Chr20272700001801800000
NC_000021.8Chr217767200834728320062
NC_000022.10Chr2243324106379219410155

Samplesets

Number of Samplesets: 3

Sampleset ID:
1
Name:
KZK
Size:
44
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDSubject ID EthnicitySubject Phenotype
    KZK09KZK09KazakhNot reported
    KZK03KZK03KazakhNot reported
    KZK16KZK16KazakhNot reported
    KZK19KZK19KazakhNot reported
    KZK12KZK12KazakhNot reported
    KZK41KZK41KazakhNot reported
    KZK13KZK13KazakhNot reported
    KZK40KZK40KazakhNot reported
    KZK35KZK35KazakhNot reported
    KZK24KZK24KazakhNot reported
    KZK10KZK10KazakhNot reported
    KZK31KZK31KazakhNot reported
    KZK05KZK05KazakhNot reported
    KZK17KZK17KazakhNot reported
    KZK26KZK26KazakhNot reported
    KZK37KZK37KazakhNot reported
    KZK04KZK04KazakhNot reported
    KZK36KZK36KazakhNot reported
    KZK21KZK21KazakhNot reported
    KZK15KZK15KazakhNot reported
    KZK01KZK01KazakhNot reported
    KZK29KZK29KazakhNot reported
    KZK34KZK34KazakhNot reported
    KZK39KZK39KazakhNot reported
    KZK32KZK32KazakhNot reported
    KZK18KZK18KazakhNot reported
    KZK28KZK28KazakhNot reported
    KZK11KZK11KazakhNot reported
    KZK02KZK02KazakhNot reported
    KZK23KZK23KazakhNot reported
    KZK14KZK14KazakhNot reported
    KZK43KZK43KazakhNot reported
    KZK22KZK22KazakhNot reported
    KZK44KZK44KazakhNot reported
    KZK06KZK06KazakhNot reported
    KZK38KZK38KazakhNot reported
    KZK30KZK30KazakhNot reported
    KZK42KZK42KazakhNot reported
    KZK33KZK33KazakhNot reported
    KZK08KZK08KazakhNot reported
    KZK20KZK20KazakhNot reported
    KZK07KZK07KazakhNot reported
    KZK27KZK27KazakhNot reported
    KZK25KZK25KazakhNot reported
    Sampleset ID:
    2
    Name:
    KGZ
    Size:
    46
    Organisms:
    Homo sapiens
    Sampleset Phenotype(s):
    None reported
  • Download Samples as CSV file
  • Samples for sampleset 2
    Sample IDSubject ID EthnicitySubject Phenotype
    KGZ02KGZ02KirgizNot reported
    KGZ39KGZ39KirgizNot reported
    KGZ24KGZ24KirgizNot reported
    KGZ08KGZ08KirgizNot reported
    KGZ40KGZ40KirgizNot reported
    KGZ28KGZ28KirgizNot reported
    KGZ07KGZ07KirgizNot reported
    KGZ13KGZ13KirgizNot reported
    KGZ42KGZ42KirgizNot reported
    KGZ15KGZ15KirgizNot reported
    KGZ05KGZ05KirgizNot reported
    KGZ23KGZ23KirgizNot reported
    KGZ17KGZ17KirgizNot reported
    KGZ36KGZ36KirgizNot reported
    KGZ20KGZ20KirgizNot reported
    KGZ46KGZ46KirgizNot reported
    KGZ29KGZ29KirgizNot reported
    KGZ04KGZ04KirgizNot reported
    KGZ11KGZ11KirgizNot reported
    KGZ30KGZ30KirgizNot reported
    KGZ06KGZ06KirgizNot reported
    KGZ35KGZ35KirgizNot reported
    KGZ01KGZ01KirgizNot reported
    KGZ22KGZ22KirgizNot reported
    KGZ34KGZ34KirgizNot reported
    KGZ41KGZ41KirgizNot reported
    KGZ12KGZ12KirgizNot reported
    KGZ33KGZ33KirgizNot reported
    KGZ37KGZ37KirgizNot reported
    KGZ45KGZ45KirgizNot reported
    KGZ27KGZ27KirgizNot reported
    KGZ25KGZ25KirgizNot reported
    KGZ26KGZ26KirgizNot reported
    KGZ38KGZ38KirgizNot reported
    KGZ03KGZ03KirgizNot reported
    KGZ09KGZ09KirgizNot reported
    KGZ18KGZ18KirgizNot reported
    KGZ44KGZ44KirgizNot reported
    KGZ19KGZ19KirgizNot reported
    KGZ16KGZ16KirgizNot reported
    KGZ10KGZ10KirgizNot reported
    KGZ31KGZ31KirgizNot reported
    KGZ32KGZ32KirgizNot reported
    KGZ14KGZ14KirgizNot reported
    KGZ43KGZ43KirgizNot reported
    KGZ21KGZ21KirgizNot reported
    Sampleset ID:
    3
    Name:
    UIG
    Size:
    41
    Organisms:
    Homo sapiens
    Sampleset Phenotype(s):
    None reported
  • Download Samples as CSV file
  • Samples for sampleset 3
    Sample IDSubject ID EthnicitySubject Phenotype
    UIG22UIG22UyghurNot reported
    UIG30UIG30UyghurNot reported
    UIG40UIG40UyghurNot reported
    UIG14UIG14UyghurNot reported
    UIG29UIG29UyghurNot reported
    UIG24UIG24UyghurNot reported
    UIG34UIG34UyghurNot reported
    UIG13UIG13UyghurNot reported
    UIG07UIG07UyghurNot reported
    UIG03UIG03UyghurNot reported
    UIG11UIG11UyghurNot reported
    UIG05UIG05UyghurNot reported
    UIG27UIG27UyghurNot reported
    UIG02UIG02UyghurNot reported
    UIG38UIG38UyghurNot reported
    UIG32UIG32UyghurNot reported
    UIG16UIG16UyghurNot reported
    UIG33UIG33UyghurNot reported
    UIG21UIG21UyghurNot reported
    UIG17UIG17UyghurNot reported
    UIG28UIG28UyghurNot reported
    UIG37UIG37UyghurNot reported
    UIG12UIG12UyghurNot reported
    UIG19UIG19UyghurNot reported
    UIG15UIG15UyghurNot reported
    UIG35UIG35UyghurNot reported
    UIG04UIG04UyghurNot reported
    UIG25UIG25UyghurNot reported
    UIG08UIG08UyghurNot reported
    UIG06UIG06UyghurNot reported
    UIG01UIG01UyghurNot reported
    UIG39UIG39UyghurNot reported
    UIG36UIG36UyghurNot reported
    UIG31UIG31UyghurNot reported
    UIG23UIG23UyghurNot reported
    UIG18UIG18UyghurNot reported
    UIG09UIG09UyghurNot reported
    UIG41UIG41UyghurNot reported
    UIG26UIG26UyghurNot reported
    UIG10UIG10UyghurNot reported
    UIG20UIG20UyghurNot reported

    Experimental Details

    Experiment IDTypeMethodAnalysisNumber of Variant Calls
    1DiscoverySNP arraySNP genotyping analysis18,875

    Validations

    No validation data were submitted for this study.

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