esv3648978
- Organism: Homo sapiens
- Study:estd216 (Kasak et al. 2015)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:15,009
- Description:PLEASE NOTE: The calls represented in this region now have equivalents in the study Clinical Structural Variants (nstd102). Please use the preferred nstd102 variant region accession for this variant; you can find it at top right under "Links to Other Resources" or in the mapping file provided here.
- Publication(s):Kasak et al. 2015
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1174 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1179 SVs from 81 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3648978 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 90,055,411 | 90,070,419 |
| esv3648978 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 90,094,257 | 90,109,261 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|---|
| essv16463298 | deletion | SNP array | Probe signal intensity | not provided | ClinVar | SCV000191182 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv16463298 | Remapped | Good | NC_000002.12:g.(90 055411_?)_(?_90070 419)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 90,055,411 | 90,070,419 |
| essv16463298 | Submitted genomic | NC_000002.11:g.(90 094257_?)_(?_90109 261)del | GRCh37 (hg19) | NC_000002.11 | Chr2 | 90,094,257 | 90,109,261 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Clinical Interpretation | Source of Interpretation | ClinVar ID |
|---|---|---|---|---|---|
| essv16463298 | GRCh37: NC_000002.11:g.(90094257_?)_(?_90109261)del | deletion | not provided | ClinVar | SCV000191182 |