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dbVar

Database of genomic structural variation

esv1841832

Organism: Homo sapiens

Study:estd188 (Pinto et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1,765,645

Publication(s):Pinto et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 7320 SVs from 130 studies. See in: genome view

Remapped(Score: Pass):46,157,935-47,923,579

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
esv1841832	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	46,157,935	47,923,579
esv1841832	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	46,691,159	47,704,605
esv1841832	Remapped	Pass	GRCh37.p13	PATCHES	First Pass	NW_003871068.1	Chr10\|NW_0 03871068.1	431,049	2,010,264
esv1841832	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	46,111,165	47,174,611

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv4427906	copy number gain	NA10851	SNP array	SNP genotyping analysis	9,157

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv4427906	Remapped	Pass	NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	46,157,935	47,923,579
essv4427906	Remapped	Pass	NW_003871068.1:g.( ?_431049)_(2010264 _?)dup	GRCh37.p13	First Pass	NW_003871068.1	Chr10\|NW_0 03871068.1	431,049	2,010,264
essv4427906	Remapped	Good	NC_000010.10:g.(?_ 46691159)_(4770460 5_?)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	46,691,159	47,704,605
essv4427906	Submitted genomic		NC_000010.9:g.(?_4 6111165)_(47174611 _?)dup	NCBI36 (hg18)		NC_000010.9	Chr10	46,111,165	47,174,611

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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