esv3410125
- Organism: Homo sapiens
- Study:estd59 (1000 Genomes Consortium Pilot Project)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:3,043
- Publication(s):1000 Genomes Project Consortium et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 361 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 361 SVs from 21 studies. See in: genome view
Overlapping variant regions from other studies: 121 SVs from 8 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3410125 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000024.10 | ChrY | 11,328,540 (-110, +1990) | 11,331,582 (-1580, +120) |
| esv3410125 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000024.9 | ChrY | 13,484,216 (-110, +1990) | 13,487,258 (-1580, +120) |
| esv3410125 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000024.8 | ChrY | 11,944,216 (-110, +1990) | 11,947,258 (-1580, +120) |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv8809650 | inversion | SAMN00801888 | Sequencing | Paired-end mapping | 69,298 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv8809650 | Remapped | Perfect | NC_000024.10:g.(11 328430_11330530)_( 11330002_11331702) inv3074 | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 11,328,540 (-110, +1990) | 11,331,582 (-1580, +120) |
| essv8809650 | Remapped | Perfect | NC_000024.9:g.(134 84106_13486206)_(1 3485678_13487378)i nv3074 | GRCh37.p13 | First Pass | NC_000024.9 | ChrY | 13,484,216 (-110, +1990) | 13,487,258 (-1580, +120) |
| essv8809650 | Submitted genomic | NC_000024.8:g.(119 44106_11946206)_(1 1945678_11947378)i nv3074 | NCBI36 (hg18) | NC_000024.8 | ChrY | 11,944,216 (-110, +1990) | 11,947,258 (-1580, +120) |