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dbVar

Database of genomic structural variation

esv2760566

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:305,960

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 908 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):40,592,210-40,898,169

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2760566	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	40,592,210	40,898,169
esv2760566	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	40,613,760	40,919,719
esv2760566	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	40,570,336	40,876,295

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv6995857	copy number loss	SW_1345	SNP array	SNP genotyping analysis	41
essv6995858	copy number loss	SW_1471	SNP array	SNP genotyping analysis	25
essv6995859	copy number loss	SW_1289	SNP array	SNP genotyping analysis	40

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv6995857	Remapped	Perfect	NC_000011.10:g.(?_ 40592210)_(4071904 4_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	40,592,210	40,719,044
essv6995858	Remapped	Perfect	NC_000011.10:g.(?_ 40658597)_(4089816 9_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	40,658,597	40,898,169
essv6995859	Remapped	Perfect	NC_000011.10:g.(?_ 40751332)_(4077755 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	40,751,332	40,777,552
essv6995857	Remapped	Perfect	NC_000011.9:g.(?_4 0613760)_(40740594 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	40,613,760	40,740,594
essv6995858	Remapped	Perfect	NC_000011.9:g.(?_4 0680147)_(40919719 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	40,680,147	40,919,719
essv6995859	Remapped	Perfect	NC_000011.9:g.(?_4 0772882)_(40799102 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	40,772,882	40,799,102
essv6995857	Submitted genomic		NC_000011.8:g.(?_4 0570336)_(40697170 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	40,570,336	40,697,170
essv6995858	Submitted genomic		NC_000011.8:g.(?_4 0636723)_(40876295 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	40,636,723	40,876,295
essv6995859	Submitted genomic		NC_000011.8:g.(?_4 0729458)_(40755678 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	40,729,458	40,755,678

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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