esv2761564
- Organism: Homo sapiens
- Study:estd203 (Vogler et al. 2010)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,684
- Publication(s):Vogler et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 382 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 382 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 116 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv2761564 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 2,520,075 | 2,534,758 |
| esv2761564 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 2,562,267 | 2,576,950 |
| esv2761564 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 2,552,267 | 2,566,950 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv6994392 | copy number loss | SW_0703 | SNP array | SNP genotyping analysis | 42 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv6994392 | Remapped | Perfect | NC_000010.11:g.(?_ 2520075)_(2534758_ ?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 2,520,075 | 2,534,758 |
| essv6994392 | Remapped | Perfect | NC_000010.10:g.(?_ 2562267)_(2576950_ ?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 2,562,267 | 2,576,950 |
| essv6994392 | Submitted genomic | NC_000010.9:g.(?_2 552267)_(2566950_? )del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 2,552,267 | 2,566,950 |