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dbVar

Database of genomic structural variation

esv2762333

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:202,229

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 772 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):80,273,858-80,476,086

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2762333	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	80,273,858	80,476,086
esv2762333	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	80,307,755	80,509,983
esv2762333	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	78,865,256	79,067,484

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7001458	copy number loss	SW_0170	SNP array	SNP genotyping analysis	59
essv7001459	copy number loss	SW_0628	SNP array	SNP genotyping analysis	42
essv7001460	copy number loss	SW_0352	SNP array	SNP genotyping analysis	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7001458	Remapped	Perfect	NC_000016.10:g.(?_ 80273858)_(8045892 8_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	80,273,858	80,458,928
essv7001459	Remapped	Perfect	NC_000016.10:g.(?_ 80455032)_(8046932 6_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	80,455,032	80,469,326
essv7001460	Remapped	Perfect	NC_000016.10:g.(?_ 80455032)_(8047608 6_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	80,455,032	80,476,086
essv7001458	Remapped	Perfect	NC_000016.9:g.(?_8 0307755)_(80492825 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	80,307,755	80,492,825
essv7001459	Remapped	Perfect	NC_000016.9:g.(?_8 0488929)_(80503223 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	80,488,929	80,503,223
essv7001460	Remapped	Perfect	NC_000016.9:g.(?_8 0488929)_(80509983 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	80,488,929	80,509,983
essv7001458	Submitted genomic		NC_000016.8:g.(?_7 8865256)_(79050326 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	78,865,256	79,050,326
essv7001459	Submitted genomic		NC_000016.8:g.(?_7 9046430)_(79060724 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	79,046,430	79,060,724
essv7001460	Submitted genomic		NC_000016.8:g.(?_7 9046430)_(79067484 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	79,046,430	79,067,484

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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