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dbVar

Database of genomic structural variation

esv2762344

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:16,243

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 206 SVs from 43 studies. See in: genome view

Remapped(Score: Perfect):27,326,291-27,342,533

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2762344	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	27,326,291	27,342,533
esv2762344	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	27,337,612	27,353,854
esv2762344	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	27,245,113	27,261,355

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7000749	copy number loss	SW_0271	SNP array	SNP genotyping analysis	41
essv7000750	copy number loss	SW_0619	SNP array	SNP genotyping analysis	31
essv7000751	copy number loss	SW_0673	SNP array	SNP genotyping analysis	49
essv7000752	copy number loss	SW_0860	SNP array	SNP genotyping analysis	32
essv7000753	copy number loss	SW_1468	SNP array	SNP genotyping analysis	43
essv7000754	copy number loss	SW_1209	SNP array	SNP genotyping analysis	45

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7000749	Remapped	Perfect	NC_000016.10:g.(?_ 27326291)_(2733936 6_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	27,326,291	27,339,366
essv7000750	Remapped	Perfect	NC_000016.10:g.(?_ 27326291)_(2733936 6_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	27,326,291	27,339,366
essv7000751	Remapped	Perfect	NC_000016.10:g.(?_ 27326291)_(2733936 6_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	27,326,291	27,339,366
essv7000752	Remapped	Perfect	NC_000016.10:g.(?_ 27326291)_(2733936 6_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	27,326,291	27,339,366
essv7000753	Remapped	Perfect	NC_000016.10:g.(?_ 27326291)_(2733936 6_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	27,326,291	27,339,366
essv7000754	Remapped	Perfect	NC_000016.10:g.(?_ 27326291)_(2734253 3_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	27,326,291	27,342,533
essv7000749	Remapped	Perfect	NC_000016.9:g.(?_2 7337612)_(27350687 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	27,337,612	27,350,687
essv7000750	Remapped	Perfect	NC_000016.9:g.(?_2 7337612)_(27350687 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	27,337,612	27,350,687
essv7000751	Remapped	Perfect	NC_000016.9:g.(?_2 7337612)_(27350687 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	27,337,612	27,350,687
essv7000752	Remapped	Perfect	NC_000016.9:g.(?_2 7337612)_(27350687 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	27,337,612	27,350,687
essv7000753	Remapped	Perfect	NC_000016.9:g.(?_2 7337612)_(27350687 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	27,337,612	27,350,687
essv7000754	Remapped	Perfect	NC_000016.9:g.(?_2 7337612)_(27353854 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	27,337,612	27,353,854
essv7000749	Submitted genomic		NC_000016.8:g.(?_2 7245113)_(27258188 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	27,245,113	27,258,188
essv7000750	Submitted genomic		NC_000016.8:g.(?_2 7245113)_(27258188 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	27,245,113	27,258,188
essv7000751	Submitted genomic		NC_000016.8:g.(?_2 7245113)_(27258188 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	27,245,113	27,258,188
essv7000752	Submitted genomic		NC_000016.8:g.(?_2 7245113)_(27258188 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	27,245,113	27,258,188
essv7000753	Submitted genomic		NC_000016.8:g.(?_2 7245113)_(27258188 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	27,245,113	27,258,188
essv7000754	Submitted genomic		NC_000016.8:g.(?_2 7245113)_(27261355 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	27,245,113	27,261,355

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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