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dbVar

Database of genomic structural variation

esv2762521

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:183,183

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 798 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):241,727,738-241,910,920

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2762521	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	241,727,738	241,910,920
esv2762521	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	241,891,040	242,074,222
esv2762521	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	239,957,663	240,140,845

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7005978	copy number loss	SW_0631	SNP array	SNP genotyping analysis	33
essv7005989	copy number loss	SW_0569	SNP array	SNP genotyping analysis	27

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7005978	Remapped	Perfect	NC_000001.11:g.(?_ 241727738)_(241910 920_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	241,727,738	241,910,920
essv7005989	Remapped	Perfect	NC_000001.11:g.(?_ 241896967)_(241905 742_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	241,896,967	241,905,742
essv7005978	Remapped	Perfect	NC_000001.10:g.(?_ 241891040)_(242074 222_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	241,891,040	242,074,222
essv7005989	Remapped	Perfect	NC_000001.10:g.(?_ 242060269)_(242069 044_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	242,060,269	242,069,044
essv7005978	Submitted genomic		NC_000001.9:g.(?_2 39957663)_(2401408 45_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	239,957,663	240,140,845
essv7005989	Submitted genomic		NC_000001.9:g.(?_2 40126892)_(2401356 67_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	240,126,892	240,135,667

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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