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dbVar

Database of genomic structural variation

esv2762832

Organism: Homo sapiens

Study:estd203 (Vogler et al. 2010)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:5,680

Publication(s):Vogler et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 260 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):37,953,673-37,959,352

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Outer Stop
esv2762832	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	37,953,673	37,959,352
esv2762832	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000018.9	Chr18	35,533,637	35,539,316
esv2762832	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000018.8	Chr18	33,787,635	33,793,314

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
essv7002717	copy number loss	SW_0201	SNP array	SNP genotyping analysis	46
essv7002718	copy number loss	SW_0239	SNP array	SNP genotyping analysis	23
essv7002719	copy number loss	SW_0635	SNP array	SNP genotyping analysis	30
essv7002720	copy number loss	SW_1428	SNP array	SNP genotyping analysis	37
essv7002721	copy number loss	SW_1416	SNP array	SNP genotyping analysis	36

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
essv7002717	Remapped	Perfect	NC_000018.10:g.(?_ 37953673)_(3795717 1_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	37,953,673	37,957,171
essv7002718	Remapped	Perfect	NC_000018.10:g.(?_ 37953673)_(3795717 1_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	37,953,673	37,957,171
essv7002719	Remapped	Perfect	NC_000018.10:g.(?_ 37953673)_(3795717 1_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	37,953,673	37,957,171
essv7002720	Remapped	Perfect	NC_000018.10:g.(?_ 37953673)_(3795717 1_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	37,953,673	37,957,171
essv7002721	Remapped	Perfect	NC_000018.10:g.(?_ 37953673)_(3795935 2_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	37,953,673	37,959,352
essv7002717	Remapped	Perfect	NC_000018.9:g.(?_3 5533637)_(35537135 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	35,533,637	35,537,135
essv7002718	Remapped	Perfect	NC_000018.9:g.(?_3 5533637)_(35537135 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	35,533,637	35,537,135
essv7002719	Remapped	Perfect	NC_000018.9:g.(?_3 5533637)_(35537135 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	35,533,637	35,537,135
essv7002720	Remapped	Perfect	NC_000018.9:g.(?_3 5533637)_(35537135 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	35,533,637	35,537,135
essv7002721	Remapped	Perfect	NC_000018.9:g.(?_3 5533637)_(35539316 _?)del	GRCh37.p13	First Pass	NC_000018.9	Chr18	35,533,637	35,539,316
essv7002717	Submitted genomic		NC_000018.8:g.(?_3 3787635)_(33791133 _?)del	NCBI36 (hg18)		NC_000018.8	Chr18	33,787,635	33,791,133
essv7002718	Submitted genomic		NC_000018.8:g.(?_3 3787635)_(33791133 _?)del	NCBI36 (hg18)		NC_000018.8	Chr18	33,787,635	33,791,133
essv7002719	Submitted genomic		NC_000018.8:g.(?_3 3787635)_(33791133 _?)del	NCBI36 (hg18)		NC_000018.8	Chr18	33,787,635	33,791,133
essv7002720	Submitted genomic		NC_000018.8:g.(?_3 3787635)_(33791133 _?)del	NCBI36 (hg18)		NC_000018.8	Chr18	33,787,635	33,791,133
essv7002721	Submitted genomic		NC_000018.8:g.(?_3 3787635)_(33793314 _?)del	NCBI36 (hg18)		NC_000018.8	Chr18	33,787,635	33,793,314

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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